Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 CASK-201ENST00000378154 2494 ntTSL 5 BASIC27.44■■□□□ 1.98
USP48Q86UV5 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC27.44■■□□□ 1.98
USP48Q86UV5 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
USP48Q86UV5 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
USP48Q86UV5 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC27.43■■□□□ 1.98
USP48Q86UV5 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
USP48Q86UV5 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
USP48Q86UV5 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
USP48Q86UV5 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
USP48Q86UV5 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
USP48Q86UV5 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC27.43■■□□□ 1.98
USP48Q86UV5 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC27.43■■□□□ 1.98
USP48Q86UV5 SLC47A1P1-202ENST00000449666 945 ntBASIC27.43■■□□□ 1.98
USP48Q86UV5 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC27.43■■□□□ 1.98
USP48Q86UV5 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
USP48Q86UV5 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
USP48Q86UV5 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
USP48Q86UV5 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC27.42■■□□□ 1.98
USP48Q86UV5 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
USP48Q86UV5 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC27.42■■□□□ 1.98
USP48Q86UV5 BX842568.3-201ENST00000418104 571 ntBASIC27.42■■□□□ 1.98
USP48Q86UV5 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
USP48Q86UV5 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
USP48Q86UV5 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
USP48Q86UV5 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC27.42■■□□□ 1.98
USP48Q86UV5 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC27.41■■□□□ 1.98
USP48Q86UV5 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
USP48Q86UV5 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
USP48Q86UV5 AC004911.1-201ENST00000416316 871 ntBASIC27.41■■□□□ 1.98
USP48Q86UV5 AC006455.2-201ENST00000429931 906 ntBASIC27.41■■□□□ 1.98
USP48Q86UV5 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC27.41■■□□□ 1.98
USP48Q86UV5 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
USP48Q86UV5 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC27.41■■□□□ 1.98
USP48Q86UV5 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC27.41■■□□□ 1.98
USP48Q86UV5 AC133561.1-201ENST00000568600 2415 ntBASIC27.4■■□□□ 1.98
USP48Q86UV5 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC27.4■■□□□ 1.98
USP48Q86UV5 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC27.4■■□□□ 1.98
USP48Q86UV5 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC27.4■■□□□ 1.98
USP48Q86UV5 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
USP48Q86UV5 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC27.39■■□□□ 1.98
USP48Q86UV5 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC27.39■■□□□ 1.98
USP48Q86UV5 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
USP48Q86UV5 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
USP48Q86UV5 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC27.39■■□□□ 1.98
USP48Q86UV5 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
USP48Q86UV5 YBX1P1-201ENST00000445822 960 ntBASIC27.39■■□□□ 1.98
USP48Q86UV5 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC27.39■■□□□ 1.98
USP48Q86UV5 DUX4L2-201ENST00000561772 1275 ntBASIC27.39■■□□□ 1.98
USP48Q86UV5 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC27.39■■□□□ 1.98
USP48Q86UV5 DUX4L6-201ENST00000626483 1275 ntBASIC27.39■■□□□ 1.98
USP48Q86UV5 DUX4L1-201ENST00000627662 1275 ntBASIC27.39■■□□□ 1.98
USP48Q86UV5 DUX4L8-201ENST00000629013 1275 ntBASIC27.39■■□□□ 1.98
USP48Q86UV5 DUX4L3-201ENST00000630187 1275 ntBASIC27.39■■□□□ 1.98
USP48Q86UV5 DUX4L7-201ENST00000630678 1275 ntBASIC27.39■■□□□ 1.98
USP48Q86UV5 DUX4L5-201ENST00000630834 1275 ntBASIC27.39■■□□□ 1.98
USP48Q86UV5 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC27.39■■□□□ 1.98
USP48Q86UV5 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC27.39■■□□□ 1.97
USP48Q86UV5 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC27.39■■□□□ 1.97
USP48Q86UV5 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC27.39■■□□□ 1.97
USP48Q86UV5 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC27.39■■□□□ 1.97
USP48Q86UV5 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC27.39■■□□□ 1.97
USP48Q86UV5 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC27.38■■□□□ 1.97
USP48Q86UV5 AC131274.2-201ENST00000580697 1507 ntBASIC27.38■■□□□ 1.97
USP48Q86UV5 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
USP48Q86UV5 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
USP48Q86UV5 ID1-201ENST00000376105 1233 ntBASIC27.38■■□□□ 1.97
USP48Q86UV5 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC27.38■■□□□ 1.97
USP48Q86UV5 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC27.38■■□□□ 1.97
USP48Q86UV5 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC27.38■■□□□ 1.97
USP48Q86UV5 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC27.38■■□□□ 1.97
USP48Q86UV5 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
USP48Q86UV5 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
USP48Q86UV5 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC27.38■■□□□ 1.97
USP48Q86UV5 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
USP48Q86UV5 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC27.37■■□□□ 1.97
USP48Q86UV5 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC27.37■■□□□ 1.97
USP48Q86UV5 AC241377.3-202ENST00000626088 1088 ntBASIC27.37■■□□□ 1.97
USP48Q86UV5 AC241585.3-202ENST00000628937 1088 ntBASIC27.37■■□□□ 1.97
USP48Q86UV5 AC245100.8-202ENST00000629247 1058 ntBASIC27.37■■□□□ 1.97
USP48Q86UV5 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
USP48Q86UV5 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC27.37■■□□□ 1.97
USP48Q86UV5 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC27.37■■□□□ 1.97
USP48Q86UV5 LINC00543-201ENST00000567234 1845 ntBASIC27.37■■□□□ 1.97
USP48Q86UV5 C17orf82-201ENST00000623772 1530 ntBASIC27.36■■□□□ 1.97
USP48Q86UV5 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
USP48Q86UV5 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC27.36■■□□□ 1.97
USP48Q86UV5 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
USP48Q86UV5 MIR3181-201ENST00000578512 73 ntBASIC27.36■■□□□ 1.97
USP48Q86UV5 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
USP48Q86UV5 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC27.35■■□□□ 1.97
USP48Q86UV5 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC27.35■■□□□ 1.97
USP48Q86UV5 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
USP48Q86UV5 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC27.35■■□□□ 1.97
USP48Q86UV5 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC27.35■■□□□ 1.97
USP48Q86UV5 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC27.35■■□□□ 1.97
USP48Q86UV5 DLX3-202ENST00000512495 834 ntTSL 2 BASIC27.35■■□□□ 1.97
USP48Q86UV5 DENND3-207ENST00000518347 850 ntTSL 2 BASIC27.35■■□□□ 1.97
USP48Q86UV5 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC27.35■■□□□ 1.97
USP48Q86UV5 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
USP48Q86UV5 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC27.34■■□□□ 1.97
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms