Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
SH3RF1Q7Z6J0 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
SH3RF1Q7Z6J0 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
SH3RF1Q7Z6J0 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC25.75■■□□□ 1.71
SH3RF1Q7Z6J0 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC25.75■■□□□ 1.71
SH3RF1Q7Z6J0 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
SH3RF1Q7Z6J0 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
SH3RF1Q7Z6J0 DUX4L19-201ENST00000557448 1267 ntBASIC25.75■■□□□ 1.71
SH3RF1Q7Z6J0 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC25.75■■□□□ 1.71
SH3RF1Q7Z6J0 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
SH3RF1Q7Z6J0 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
SH3RF1Q7Z6J0 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC25.74■■□□□ 1.71
SH3RF1Q7Z6J0 SF1-220ENST00000626028 704 ntTSL 2 BASIC25.74■■□□□ 1.71
SH3RF1Q7Z6J0 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
SH3RF1Q7Z6J0 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC25.74■■□□□ 1.71
SH3RF1Q7Z6J0 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
SH3RF1Q7Z6J0 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
SH3RF1Q7Z6J0 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
SH3RF1Q7Z6J0 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC25.74■■□□□ 1.71
SH3RF1Q7Z6J0 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
SH3RF1Q7Z6J0 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC25.73■■□□□ 1.71
SH3RF1Q7Z6J0 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC25.73■■□□□ 1.71
SH3RF1Q7Z6J0 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC25.73■■□□□ 1.71
SH3RF1Q7Z6J0 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
SH3RF1Q7Z6J0 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
SH3RF1Q7Z6J0 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
SH3RF1Q7Z6J0 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC25.72■■□□□ 1.71
SH3RF1Q7Z6J0 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC25.72■■□□□ 1.71
SH3RF1Q7Z6J0 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC25.72■■□□□ 1.71
SH3RF1Q7Z6J0 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC25.72■■□□□ 1.71
SH3RF1Q7Z6J0 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC25.72■■□□□ 1.71
SH3RF1Q7Z6J0 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC25.72■■□□□ 1.71
SH3RF1Q7Z6J0 SYT6-210ENST00000641643 1587 ntBASIC25.72■■□□□ 1.71
SH3RF1Q7Z6J0 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC25.72■■□□□ 1.71
SH3RF1Q7Z6J0 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC25.72■■□□□ 1.71
SH3RF1Q7Z6J0 AC131274.2-201ENST00000580697 1507 ntBASIC25.72■■□□□ 1.71
SH3RF1Q7Z6J0 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
SH3RF1Q7Z6J0 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC25.72■■□□□ 1.71
SH3RF1Q7Z6J0 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
SH3RF1Q7Z6J0 RASA4CP-201ENST00000424092 1398 ntBASIC25.71■■□□□ 1.71
SH3RF1Q7Z6J0 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
SH3RF1Q7Z6J0 PTMA-205ENST00000410064 814 ntTSL 2 BASIC25.71■■□□□ 1.71
SH3RF1Q7Z6J0 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC25.71■■□□□ 1.71
SH3RF1Q7Z6J0 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC25.71■■□□□ 1.71
SH3RF1Q7Z6J0 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC25.71■■□□□ 1.71
SH3RF1Q7Z6J0 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC25.71■■□□□ 1.71
SH3RF1Q7Z6J0 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC25.71■■□□□ 1.71
SH3RF1Q7Z6J0 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
SH3RF1Q7Z6J0 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
SH3RF1Q7Z6J0 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
SH3RF1Q7Z6J0 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC25.7■■□□□ 1.71
SH3RF1Q7Z6J0 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
SH3RF1Q7Z6J0 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC25.69■■□□□ 1.7
SH3RF1Q7Z6J0 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SH3RF1Q7Z6J0 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC25.69■■□□□ 1.7
SH3RF1Q7Z6J0 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC25.69■■□□□ 1.7
SH3RF1Q7Z6J0 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC25.69■■□□□ 1.7
SH3RF1Q7Z6J0 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SH3RF1Q7Z6J0 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
SH3RF1Q7Z6J0 AC090192.1-201ENST00000517740 490 ntBASIC25.69■■□□□ 1.7
SH3RF1Q7Z6J0 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
SH3RF1Q7Z6J0 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC25.68■■□□□ 1.7
SH3RF1Q7Z6J0 AC068473.5-201ENST00000616428 2072 ntBASIC25.68■■□□□ 1.7
SH3RF1Q7Z6J0 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC25.68■■□□□ 1.7
SH3RF1Q7Z6J0 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
SH3RF1Q7Z6J0 NFE2L3P1-201ENST00000588207 1959 ntBASIC25.68■■□□□ 1.7
SH3RF1Q7Z6J0 SERBP1P1-201ENST00000396021 1160 ntBASIC25.68■■□□□ 1.7
SH3RF1Q7Z6J0 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC25.68■■□□□ 1.7
SH3RF1Q7Z6J0 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC25.68■■□□□ 1.7
SH3RF1Q7Z6J0 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC25.68■■□□□ 1.7
SH3RF1Q7Z6J0 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SH3RF1Q7Z6J0 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
SH3RF1Q7Z6J0 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
SH3RF1Q7Z6J0 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC25.67■■□□□ 1.7
SH3RF1Q7Z6J0 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC25.67■■□□□ 1.7
SH3RF1Q7Z6J0 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
SH3RF1Q7Z6J0 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC25.67■■□□□ 1.7
SH3RF1Q7Z6J0 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC25.67■■□□□ 1.7
SH3RF1Q7Z6J0 RARRES2P11-201ENST00000635158 484 ntBASIC25.67■■□□□ 1.7
SH3RF1Q7Z6J0 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
SH3RF1Q7Z6J0 AL022069.1-201ENST00000568025 1636 ntBASIC25.66■■□□□ 1.7
SH3RF1Q7Z6J0 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC25.66■■□□□ 1.7
SH3RF1Q7Z6J0 JTB-203ENST00000368589 1216 ntTSL 2 BASIC25.66■■□□□ 1.7
SH3RF1Q7Z6J0 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
SH3RF1Q7Z6J0 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
SH3RF1Q7Z6J0 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC25.66■■□□□ 1.7
SH3RF1Q7Z6J0 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC25.66■■□□□ 1.7
SH3RF1Q7Z6J0 AC133561.1-201ENST00000568600 2415 ntBASIC25.65■■□□□ 1.7
SH3RF1Q7Z6J0 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC25.65■■□□□ 1.7
SH3RF1Q7Z6J0 IRS3P-201ENST00000223076 1006 ntBASIC25.65■■□□□ 1.7
SH3RF1Q7Z6J0 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SH3RF1Q7Z6J0 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC25.65■■□□□ 1.7
SH3RF1Q7Z6J0 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
SH3RF1Q7Z6J0 AC008764.7-201ENST00000593779 1081 ntBASIC25.65■■□□□ 1.7
SH3RF1Q7Z6J0 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
SH3RF1Q7Z6J0 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
SH3RF1Q7Z6J0 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SH3RF1Q7Z6J0 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
SH3RF1Q7Z6J0 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC25.64■■□□□ 1.7
SH3RF1Q7Z6J0 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms