Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC27.78■■■□□ 2.04
CCDC88AQ3V6T2 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC27.78■■■□□ 2.04
CCDC88AQ3V6T2 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
CCDC88AQ3V6T2 KRT18P61-201ENST00000585825 1298 ntBASIC27.78■■■□□ 2.04
CCDC88AQ3V6T2 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
CCDC88AQ3V6T2 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
CCDC88AQ3V6T2 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
CCDC88AQ3V6T2 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC27.77■■■□□ 2.04
CCDC88AQ3V6T2 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC27.77■■■□□ 2.04
CCDC88AQ3V6T2 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.04
CCDC88AQ3V6T2 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC27.76■■■□□ 2.04
CCDC88AQ3V6T2 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC27.76■■■□□ 2.04
CCDC88AQ3V6T2 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC27.76■■■□□ 2.04
CCDC88AQ3V6T2 pRNA.6-201ENST00000610482 90 ntBASIC27.76■■■□□ 2.04
CCDC88AQ3V6T2 pRNA.5-201ENST00000612139 90 ntBASIC27.76■■■□□ 2.04
CCDC88AQ3V6T2 pRNA.11-201ENST00000618423 90 ntBASIC27.76■■■□□ 2.04
CCDC88AQ3V6T2 pRNA.13-201ENST00000619112 90 ntBASIC27.76■■■□□ 2.04
CCDC88AQ3V6T2 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
CCDC88AQ3V6T2 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
CCDC88AQ3V6T2 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC27.76■■■□□ 2.03
CCDC88AQ3V6T2 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC27.76■■■□□ 2.03
CCDC88AQ3V6T2 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC27.76■■■□□ 2.03
CCDC88AQ3V6T2 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
CCDC88AQ3V6T2 NTF6G-201ENST00000591094 616 ntBASIC27.76■■■□□ 2.03
CCDC88AQ3V6T2 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
CCDC88AQ3V6T2 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC27.76■■■□□ 2.03
CCDC88AQ3V6T2 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC27.75■■■□□ 2.03
CCDC88AQ3V6T2 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
CCDC88AQ3V6T2 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
CCDC88AQ3V6T2 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC27.75■■■□□ 2.03
CCDC88AQ3V6T2 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC27.75■■■□□ 2.03
CCDC88AQ3V6T2 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC27.75■■■□□ 2.03
CCDC88AQ3V6T2 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC27.75■■■□□ 2.03
CCDC88AQ3V6T2 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
CCDC88AQ3V6T2 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
CCDC88AQ3V6T2 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
CCDC88AQ3V6T2 AC026185.1-201ENST00000445748 174 ntBASIC27.74■■■□□ 2.03
CCDC88AQ3V6T2 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC27.74■■■□□ 2.03
CCDC88AQ3V6T2 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC27.74■■■□□ 2.03
CCDC88AQ3V6T2 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC27.74■■■□□ 2.03
CCDC88AQ3V6T2 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
CCDC88AQ3V6T2 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC27.74■■■□□ 2.03
CCDC88AQ3V6T2 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC27.74■■■□□ 2.03
CCDC88AQ3V6T2 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC27.74■■■□□ 2.03
CCDC88AQ3V6T2 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC27.74■■■□□ 2.03
CCDC88AQ3V6T2 CDCA4P2-201ENST00000441182 718 ntBASIC27.74■■■□□ 2.03
CCDC88AQ3V6T2 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC27.74■■■□□ 2.03
CCDC88AQ3V6T2 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC27.74■■■□□ 2.03
CCDC88AQ3V6T2 AC137761.2-201ENST00000561729 223 ntBASIC27.74■■■□□ 2.03
CCDC88AQ3V6T2 AC145350.3-201ENST00000569033 163 ntBASIC27.74■■■□□ 2.03
CCDC88AQ3V6T2 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC27.74■■■□□ 2.03
CCDC88AQ3V6T2 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
CCDC88AQ3V6T2 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
CCDC88AQ3V6T2 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC27.73■■■□□ 2.03
CCDC88AQ3V6T2 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
CCDC88AQ3V6T2 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC27.73■■■□□ 2.03
CCDC88AQ3V6T2 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
CCDC88AQ3V6T2 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC27.73■■■□□ 2.03
CCDC88AQ3V6T2 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC27.73■■■□□ 2.03
CCDC88AQ3V6T2 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
CCDC88AQ3V6T2 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC27.72■■■□□ 2.03
CCDC88AQ3V6T2 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
CCDC88AQ3V6T2 AL355802.2-201ENST00000402069 882 ntBASIC27.72■■■□□ 2.03
CCDC88AQ3V6T2 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC27.71■■■□□ 2.03
CCDC88AQ3V6T2 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC27.71■■■□□ 2.03
CCDC88AQ3V6T2 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC27.71■■■□□ 2.03
CCDC88AQ3V6T2 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC27.71■■■□□ 2.03
CCDC88AQ3V6T2 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC27.71■■■□□ 2.03
CCDC88AQ3V6T2 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC27.71■■■□□ 2.03
CCDC88AQ3V6T2 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC27.71■■■□□ 2.03
CCDC88AQ3V6T2 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
CCDC88AQ3V6T2 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
CCDC88AQ3V6T2 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC27.7■■■□□ 2.03
CCDC88AQ3V6T2 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC27.7■■■□□ 2.03
CCDC88AQ3V6T2 AC066615.1-201ENST00000640911 628 ntBASIC27.7■■■□□ 2.03
CCDC88AQ3V6T2 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC27.7■■■□□ 2.03
CCDC88AQ3V6T2 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC27.7■■■□□ 2.02
CCDC88AQ3V6T2 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
CCDC88AQ3V6T2 AC022211.4-201ENST00000625094 2161 ntBASIC27.7■■■□□ 2.02
CCDC88AQ3V6T2 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
CCDC88AQ3V6T2 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
CCDC88AQ3V6T2 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC27.69■■■□□ 2.02
CCDC88AQ3V6T2 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC27.69■■■□□ 2.02
CCDC88AQ3V6T2 AL022069.1-201ENST00000568025 1636 ntBASIC27.69■■■□□ 2.02
CCDC88AQ3V6T2 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC27.68■■■□□ 2.02
CCDC88AQ3V6T2 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC27.68■■■□□ 2.02
CCDC88AQ3V6T2 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
CCDC88AQ3V6T2 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC27.68■■■□□ 2.02
CCDC88AQ3V6T2 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC27.68■■■□□ 2.02
CCDC88AQ3V6T2 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC27.68■■■□□ 2.02
CCDC88AQ3V6T2 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC27.68■■■□□ 2.02
CCDC88AQ3V6T2 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC27.68■■■□□ 2.02
CCDC88AQ3V6T2 AC006015.1-201ENST00000429970 570 ntBASIC27.68■■■□□ 2.02
CCDC88AQ3V6T2 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
CCDC88AQ3V6T2 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
CCDC88AQ3V6T2 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC27.67■■■□□ 2.02
CCDC88AQ3V6T2 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
CCDC88AQ3V6T2 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC27.67■■■□□ 2.02
CCDC88AQ3V6T2 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
CCDC88AQ3V6T2 PPP1R14BP3-201ENST00000509033 445 ntBASIC27.67■■■□□ 2.02
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms