Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC105233.4-201ENST00000642045 216 ntBASIC31.52■■■□□ 2.64
MSH6P52701 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC31.52■■■□□ 2.64
MSH6P52701 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC31.51■■■□□ 2.64
MSH6P52701 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
MSH6P52701 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC31.51■■■□□ 2.63
MSH6P52701 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC31.51■■■□□ 2.63
MSH6P52701 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
MSH6P52701 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC31.5■■■□□ 2.63
MSH6P52701 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC31.5■■■□□ 2.63
MSH6P52701 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
MSH6P52701 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
MSH6P52701 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
MSH6P52701 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC31.5■■■□□ 2.63
MSH6P52701 MIR663A-201ENST00000385250 93 ntBASIC31.5■■■□□ 2.63
MSH6P52701 TSPY20P-201ENST00000450910 630 ntBASIC31.5■■■□□ 2.63
MSH6P52701 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC31.5■■■□□ 2.63
MSH6P52701 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC31.5■■■□□ 2.63
MSH6P52701 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC31.5■■■□□ 2.63
MSH6P52701 MIR6089-201ENST00000616698 64 ntBASIC31.5■■■□□ 2.63
MSH6P52701 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
MSH6P52701 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC31.5■■■□□ 2.63
MSH6P52701 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC31.49■■■□□ 2.63
MSH6P52701 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC31.49■■■□□ 2.63
MSH6P52701 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC31.49■■■□□ 2.63
MSH6P52701 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
MSH6P52701 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC31.49■■■□□ 2.63
MSH6P52701 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC31.49■■■□□ 2.63
MSH6P52701 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC31.49■■■□□ 2.63
MSH6P52701 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
MSH6P52701 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC31.48■■■□□ 2.63
MSH6P52701 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
MSH6P52701 SHD-204ENST00000599689 1729 ntTSL 5 BASIC31.48■■■□□ 2.63
MSH6P52701 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC31.48■■■□□ 2.63
MSH6P52701 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC31.47■■■□□ 2.63
MSH6P52701 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC31.47■■■□□ 2.63
MSH6P52701 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
MSH6P52701 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC31.47■■■□□ 2.63
MSH6P52701 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC31.47■■■□□ 2.63
MSH6P52701 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC31.47■■■□□ 2.63
MSH6P52701 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
MSH6P52701 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
MSH6P52701 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
MSH6P52701 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC31.46■■■□□ 2.63
MSH6P52701 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC31.46■■■□□ 2.63
MSH6P52701 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC31.45■■■□□ 2.63
MSH6P52701 METTL26-203ENST00000397664 604 ntTSL 2 BASIC31.45■■■□□ 2.63
MSH6P52701 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC31.45■■■□□ 2.63
MSH6P52701 APTR-205ENST00000447009 902 ntTSL 2 BASIC31.45■■■□□ 2.63
MSH6P52701 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC31.45■■■□□ 2.63
MSH6P52701 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC31.45■■■□□ 2.63
MSH6P52701 WT1-AS_3.1-201ENST00000613262 234 ntBASIC31.45■■■□□ 2.63
MSH6P52701 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
MSH6P52701 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
MSH6P52701 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
MSH6P52701 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
MSH6P52701 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
MSH6P52701 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
MSH6P52701 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC31.45■■■□□ 2.63
MSH6P52701 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC31.44■■■□□ 2.62
MSH6P52701 AP004607.4-201ENST00000530158 1459 ntBASIC31.44■■■□□ 2.62
MSH6P52701 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC31.44■■■□□ 2.62
MSH6P52701 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC31.44■■■□□ 2.62
MSH6P52701 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC31.44■■■□□ 2.62
MSH6P52701 COX20-201ENST00000366528 568 ntTSL 2 BASIC31.44■■■□□ 2.62
MSH6P52701 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
MSH6P52701 TPRG1LP1-201ENST00000598702 760 ntBASIC31.44■■■□□ 2.62
MSH6P52701 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC31.44■■■□□ 2.62
MSH6P52701 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
MSH6P52701 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
MSH6P52701 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC31.44■■■□□ 2.62
MSH6P52701 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
MSH6P52701 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
MSH6P52701 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
MSH6P52701 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC31.44■■■□□ 2.62
MSH6P52701 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
MSH6P52701 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC31.43■■■□□ 2.62
MSH6P52701 GPX1P1-201ENST00000388829 606 ntBASIC31.43■■■□□ 2.62
MSH6P52701 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC31.43■■■□□ 2.62
MSH6P52701 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC31.43■■■□□ 2.62
MSH6P52701 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC31.43■■■□□ 2.62
MSH6P52701 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC31.43■■■□□ 2.62
MSH6P52701 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC31.43■■■□□ 2.62
MSH6P52701 CD37-213ENST00000598095 1598 ntTSL 2 BASIC31.43■■■□□ 2.62
MSH6P52701 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
MSH6P52701 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
MSH6P52701 AC004854.2-201ENST00000608450 1441 ntBASIC31.43■■■□□ 2.62
MSH6P52701 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
MSH6P52701 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
MSH6P52701 MFF-208ENST00000409616 1247 ntTSL 5 BASIC31.43■■■□□ 2.62
MSH6P52701 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC31.43■■■□□ 2.62
MSH6P52701 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
MSH6P52701 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
MSH6P52701 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
MSH6P52701 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC31.42■■■□□ 2.62
MSH6P52701 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
MSH6P52701 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC31.41■■■□□ 2.62
MSH6P52701 AC142086.2-201ENST00000569753 217 ntBASIC31.41■■■□□ 2.62
MSH6P52701 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
MSH6P52701 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC31.4■■■□□ 2.62
MSH6P52701 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC31.4■■■□□ 2.62
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms