Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.95■□□□□ 0.94
RFX3P48380 AC005703.6-201ENST00000623265 1329 ntBASIC20.95■□□□□ 0.94
RFX3P48380 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
RFX3P48380 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RFX3P48380 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
RFX3P48380 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.94■□□□□ 0.94
RFX3P48380 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
RFX3P48380 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RFX3P48380 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.94■□□□□ 0.94
RFX3P48380 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RFX3P48380 GUSBP5-201ENST00000418136 578 ntBASIC20.94■□□□□ 0.94
RFX3P48380 KRT16P3-201ENST00000439127 1283 ntBASIC20.94■□□□□ 0.94
RFX3P48380 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.94■□□□□ 0.94
RFX3P48380 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RFX3P48380 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
RFX3P48380 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RFX3P48380 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
RFX3P48380 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
RFX3P48380 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
RFX3P48380 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
RFX3P48380 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RFX3P48380 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
RFX3P48380 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.92■□□□□ 0.94
RFX3P48380 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
RFX3P48380 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RFX3P48380 AC079834.2-201ENST00000609776 1949 ntBASIC20.92■□□□□ 0.94
RFX3P48380 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RFX3P48380 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.92■□□□□ 0.94
RFX3P48380 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
RFX3P48380 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.92■□□□□ 0.94
RFX3P48380 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RFX3P48380 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RFX3P48380 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RFX3P48380 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
RFX3P48380 ANOS2P-203ENST00000472227 1816 ntBASIC20.92■□□□□ 0.94
RFX3P48380 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RFX3P48380 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
RFX3P48380 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
RFX3P48380 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RFX3P48380 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RFX3P48380 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
RFX3P48380 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.91■□□□□ 0.94
RFX3P48380 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC20.91■□□□□ 0.94
RFX3P48380 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.91■□□□□ 0.94
RFX3P48380 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
RFX3P48380 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
RFX3P48380 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.91■□□□□ 0.94
RFX3P48380 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.91■□□□□ 0.94
RFX3P48380 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RFX3P48380 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.91■□□□□ 0.94
RFX3P48380 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.9■□□□□ 0.94
RFX3P48380 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.9■□□□□ 0.94
RFX3P48380 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RFX3P48380 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RFX3P48380 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RFX3P48380 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RFX3P48380 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RFX3P48380 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.9■□□□□ 0.94
RFX3P48380 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
RFX3P48380 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.9■□□□□ 0.94
RFX3P48380 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.9■□□□□ 0.94
RFX3P48380 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.9■□□□□ 0.94
RFX3P48380 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.9■□□□□ 0.94
RFX3P48380 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC20.9■□□□□ 0.94
RFX3P48380 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RFX3P48380 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RFX3P48380 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.9■□□□□ 0.94
RFX3P48380 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
RFX3P48380 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RFX3P48380 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RFX3P48380 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.9■□□□□ 0.94
RFX3P48380 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.9■□□□□ 0.94
RFX3P48380 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RFX3P48380 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
RFX3P48380 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RFX3P48380 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RFX3P48380 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
RFX3P48380 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.89■□□□□ 0.93
RFX3P48380 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
RFX3P48380 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
RFX3P48380 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
RFX3P48380 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RFX3P48380 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RFX3P48380 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RFX3P48380 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
RFX3P48380 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
RFX3P48380 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RFX3P48380 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.88■□□□□ 0.93
RFX3P48380 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
RFX3P48380 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.88■□□□□ 0.93
RFX3P48380 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
RFX3P48380 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RFX3P48380 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
RFX3P48380 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
RFX3P48380 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
RFX3P48380 DUSP8P5-201ENST00000422884 1815 ntBASIC20.88■□□□□ 0.93
RFX3P48380 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
RFX3P48380 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RFX3P48380 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
RFX3P48380 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms