Protein–RNA interactions for Protein: P41817

CUP9, Homeobox protein CUP9, yeastyeast

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUP9P41817 tQ(UUG)E1tQ(UUG)E1 72 nt3.75□□□□□ -1.81
CUP9P41817 tQ(UUG)HtQ(UUG)H 72 nt3.75□□□□□ -1.81
CUP9P41817 tQ(UUG)LtQ(UUG)L 72 nt3.75□□□□□ -1.81
CUP9P41817 RDN5-1RDN5-1 121 nt3.75□□□□□ -1.81
CUP9P41817 ECM1YAL059W 639 nt3.75□□□□□ -1.81
CUP9P41817 RDN5-6RDN5-6 121 nt3.75□□□□□ -1.81
CUP9P41817 SIS2YKR072C 1689 nt3.75□□□□□ -1.81
CUP9P41817 GUS1YGL245W 2127 nt3.74□□□□□ -1.81
CUP9P41817 PRT1YOR361C 2292 nt3.74□□□□□ -1.81
CUP9P41817 CDC48YDL126C 2508 nt3.74□□□□□ -1.81
CUP9P41817 IRC22YEL001C 678 nt3.74□□□□□ -1.81
CUP9P41817 CAF16YFL028C 870 nt3.74□□□□□ -1.81
CUP9P41817 RPL24AYGL031C 468 nt3.74□□□□□ -1.81
CUP9P41817 MRP4YHL004W 1185 nt3.74□□□□□ -1.81
CUP9P41817 YJR096WYJR096W 849 nt3.74□□□□□ -1.81
CUP9P41817 HEK2YBL032W 1146 nt3.74□□□□□ -1.81
CUP9P41817 DCS2YOR173W 1062 nt3.74□□□□□ -1.81
CUP9P41817 OPY2YPR075C 1083 nt3.74□□□□□ -1.81
CUP9P41817 STR2YJR130C 1920 nt3.74□□□□□ -1.81
CUP9P41817 NNK1YKL171W 2787 nt3.74□□□□□ -1.81
CUP9P41817 YCR023CYCR023C 1836 nt3.73□□□□□ -1.81
CUP9P41817 SSB1YDL229W 1842 nt3.73□□□□□ -1.81
CUP9P41817 YDR056CYDR056C 618 nt3.73□□□□□ -1.81
CUP9P41817 CPR1YDR155C 489 nt3.73□□□□□ -1.81
CUP9P41817 CNL1YDR357C 369 nt3.73□□□□□ -1.81
CUP9P41817 GLE2YER107C 1098 nt3.73□□□□□ -1.81
CUP9P41817 RAD27YKL113C 1149 nt3.73□□□□□ -1.81
CUP9P41817 SUA7YPR086W 1038 nt3.73□□□□□ -1.81
CUP9P41817 POP4YBR257W 840 nt3.73□□□□□ -1.81
CUP9P41817 CWH43YCR017C 2862 nt3.73□□□□□ -1.81
CUP9P41817 SNF2YOR290C 5112 nt3.73□□□□□ -1.81
CUP9P41817 KCC4YCL024W 3114 nt3.73□□□□□ -1.81
CUP9P41817 HOYDL227C 1761 nt3.73□□□□□ -1.81
CUP9P41817 MNN1YER001W 2289 nt3.73□□□□□ -1.81
CUP9P41817 PMC1YGL006W 3522 nt3.73□□□□□ -1.81
CUP9P41817 RPG1YBR079C 2895 nt3.73□□□□□ -1.81
CUP9P41817 HUL4YJR036C 2679 nt3.72□□□□□ -1.81
CUP9P41817 VBA2YBR293W 1425 nt3.72□□□□□ -1.81
CUP9P41817 YGR269WYGR269W 327 nt3.72□□□□□ -1.81
CUP9P41817 YHR032C-AYHR032C-A 120 nt3.72□□□□□ -1.81
CUP9P41817 IMP2YMR035W 534 nt3.72□□□□□ -1.81
CUP9P41817 NAT5YOR253W 531 nt3.72□□□□□ -1.81
CUP9P41817 YDC1YPL087W 954 nt3.72□□□□□ -1.81
CUP9P41817 CBP3YPL215W 1008 nt3.72□□□□□ -1.81
CUP9P41817 HAL1YPR005C 885 nt3.72□□□□□ -1.81
CUP9P41817 SBE2YDR351W 2595 nt3.72□□□□□ -1.81
CUP9P41817 PEX30YLR324W 1572 nt3.72□□□□□ -1.81
CUP9P41817 CDC15YAR019C 2925 nt3.71□□□□□ -1.81
CUP9P41817 UPC2YDR213W 2742 nt3.71□□□□□ -1.82
CUP9P41817 CWC2YDL209C 1020 nt3.71□□□□□ -1.82
CUP9P41817 YHR145CYHR145C 357 nt3.71□□□□□ -1.82
CUP9P41817 TAF11YML015C 1041 nt3.71□□□□□ -1.82
CUP9P41817 XKS1YGR194C 1803 nt3.71□□□□□ -1.82
CUP9P41817 SSA2YLL024C 1920 nt3.71□□□□□ -1.82
CUP9P41817 FDC1YDR539W 1512 nt3.7□□□□□ -1.82
CUP9P41817 RCR2YDR003W 633 nt3.7□□□□□ -1.82
CUP9P41817 UPS3YDR185C 540 nt3.7□□□□□ -1.82
CUP9P41817 HST4YDR191W 1113 nt3.7□□□□□ -1.82
CUP9P41817 ACT1YFL039C 1128 nt3.7□□□□□ -1.82
CUP9P41817 YML119WYML119W 1074 nt3.7□□□□□ -1.82
CUP9P41817 EOS1YNL080C 1101 nt3.7□□□□□ -1.82
CUP9P41817 GSM1YJL103C 1857 nt3.7□□□□□ -1.82
CUP9P41817 ORC6YHR118C 1308 nt3.7□□□□□ -1.82
CUP9P41817 SEC2YNL272C 2280 nt3.69□□□□□ -1.82
CUP9P41817 YCR085WYCR085W 354 nt3.69□□□□□ -1.82
CUP9P41817 AHA1YDR214W 1053 nt3.69□□□□□ -1.82
CUP9P41817 LSB1YGR136W 726 nt3.69□□□□□ -1.82
CUP9P41817 PER33YLR064W 822 nt3.69□□□□□ -1.82
CUP9P41817 YAR030CYAR030C 342 nt3.69□□□□□ -1.82
CUP9P41817 RSF1YMR030W 1131 nt3.69□□□□□ -1.82
CUP9P41817 VAC7YNL054W 3498 nt3.69□□□□□ -1.82
CUP9P41817 STB2YMR053C 2553 nt3.68□□□□□ -1.82
CUP9P41817 AIM21YIR003W 2040 nt3.68□□□□□ -1.82
CUP9P41817 ARH1YDR376W 1482 nt3.68□□□□□ -1.82
CUP9P41817 HSP30YCR021C 999 nt3.68□□□□□ -1.82
CUP9P41817 SUP56tL(CAA)A 82 nt3.68□□□□□ -1.82
CUP9P41817 SUP53tL(CAA)C 82 nt3.68□□□□□ -1.82
CUP9P41817 tL(CAA)DtL(CAA)D 82 nt3.68□□□□□ -1.82
CUP9P41817 tL(CAA)G1tL(CAA)G1 82 nt3.68□□□□□ -1.82
CUP9P41817 SUP54tL(CAA)G2 82 nt3.68□□□□□ -1.82
CUP9P41817 tL(CAA)G3tL(CAA)G3 82 nt3.68□□□□□ -1.82
CUP9P41817 tL(CAA)KtL(CAA)K 82 nt3.68□□□□□ -1.82
CUP9P41817 tL(CAA)LtL(CAA)L 82 nt3.68□□□□□ -1.82
CUP9P41817 CNN1YFR046C 1086 nt3.68□□□□□ -1.82
CUP9P41817 tL(CAA)MtL(CAA)M 82 nt3.68□□□□□ -1.82
CUP9P41817 tL(CAA)NtL(CAA)N 82 nt3.68□□□□□ -1.82
CUP9P41817 YHL034W-AYHL034W-A 462 nt3.68□□□□□ -1.82
CUP9P41817 ATG17YLR423C 1254 nt3.68□□□□□ -1.82
CUP9P41817 SPS18YNL204C 903 nt3.68□□□□□ -1.82
CUP9P41817 SUI1YNL244C 327 nt3.68□□□□□ -1.82
CUP9P41817 MDM12YOL009C 816 nt3.68□□□□□ -1.82
CUP9P41817 KIN4YOR233W 2403 nt3.68□□□□□ -1.82
CUP9P41817 AIP1YMR092C 1848 nt3.67□□□□□ -1.82
CUP9P41817 TCB3YML072C 4638 nt3.67□□□□□ -1.82
CUP9P41817 RIA1YNL163C 3333 nt3.67□□□□□ -1.82
CUP9P41817 KIN28YDL108W 921 nt3.67□□□□□ -1.82
CUP9P41817 RMI1YPL024W 726 nt3.67□□□□□ -1.82
CUP9P41817 AVT1YJR001W 1809 nt3.67□□□□□ -1.82
CUP9P41817 COP1YDL145C 3606 nt3.66□□□□□ -1.82
CUP9P41817 IZH3YLR023C 1632 nt3.66□□□□□ -1.82
Retrieved 100 of 7,029 protein–RNA pairs in 25.8 ms