Protein–RNA interactions for Protein: P30531

SLC6A1, Sodium- and chloride-dependent GABA transporter 1, humanhuman

Predictions only

Length 599 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A1P30531 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC19.28■□□□□ 0.68
SLC6A1P30531 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.28■□□□□ 0.68
SLC6A1P30531 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
SLC6A1P30531 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SLC6A1P30531 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.27■□□□□ 0.68
SLC6A1P30531 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
SLC6A1P30531 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SLC6A1P30531 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC19.27■□□□□ 0.68
SLC6A1P30531 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
SLC6A1P30531 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SLC6A1P30531 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
SLC6A1P30531 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
SLC6A1P30531 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC19.27■□□□□ 0.68
SLC6A1P30531 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SLC6A1P30531 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC19.27■□□□□ 0.68
SLC6A1P30531 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.67
SLC6A1P30531 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
SLC6A1P30531 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC19.26■□□□□ 0.67
SLC6A1P30531 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
SLC6A1P30531 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SLC6A1P30531 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SLC6A1P30531 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
SLC6A1P30531 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SLC6A1P30531 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SLC6A1P30531 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.26■□□□□ 0.67
SLC6A1P30531 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC19.26■□□□□ 0.67
SLC6A1P30531 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
SLC6A1P30531 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SLC6A1P30531 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC19.25■□□□□ 0.67
SLC6A1P30531 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
SLC6A1P30531 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
SLC6A1P30531 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SLC6A1P30531 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SLC6A1P30531 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC19.25■□□□□ 0.67
SLC6A1P30531 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC19.25■□□□□ 0.67
SLC6A1P30531 AL157400.5-201ENST00000507624 621 ntBASIC19.25■□□□□ 0.67
SLC6A1P30531 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC19.25■□□□□ 0.67
SLC6A1P30531 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
SLC6A1P30531 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
SLC6A1P30531 AL161729.1-201ENST00000604104 1402 ntBASIC19.25■□□□□ 0.67
SLC6A1P30531 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.24■□□□□ 0.67
SLC6A1P30531 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SLC6A1P30531 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SLC6A1P30531 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SLC6A1P30531 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SLC6A1P30531 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
SLC6A1P30531 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SLC6A1P30531 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SLC6A1P30531 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
SLC6A1P30531 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SLC6A1P30531 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SLC6A1P30531 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SLC6A1P30531 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SLC6A1P30531 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
SLC6A1P30531 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SLC6A1P30531 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SLC6A1P30531 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SLC6A1P30531 AC092667.1-201ENST00000434301 2586 ntBASIC19.23■□□□□ 0.67
SLC6A1P30531 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SLC6A1P30531 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SLC6A1P30531 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SLC6A1P30531 AC007029.1-201ENST00000604183 313 ntBASIC19.23■□□□□ 0.67
SLC6A1P30531 MOB2-207ENST00000614710 705 ntTSL 5 BASIC19.23■□□□□ 0.67
SLC6A1P30531 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SLC6A1P30531 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SLC6A1P30531 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SLC6A1P30531 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC19.23■□□□□ 0.67
SLC6A1P30531 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SLC6A1P30531 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.22■□□□□ 0.67
SLC6A1P30531 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SLC6A1P30531 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SLC6A1P30531 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SLC6A1P30531 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
SLC6A1P30531 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SLC6A1P30531 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
SLC6A1P30531 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
SLC6A1P30531 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SLC6A1P30531 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.22■□□□□ 0.67
SLC6A1P30531 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SLC6A1P30531 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SLC6A1P30531 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SLC6A1P30531 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC19.22■□□□□ 0.67
SLC6A1P30531 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SLC6A1P30531 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SLC6A1P30531 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SLC6A1P30531 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.21■□□□□ 0.67
SLC6A1P30531 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SLC6A1P30531 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SLC6A1P30531 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SLC6A1P30531 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SLC6A1P30531 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SLC6A1P30531 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
SLC6A1P30531 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SLC6A1P30531 GFER-205ENST00000569451 517 ntTSL 5 BASIC19.21■□□□□ 0.67
SLC6A1P30531 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
SLC6A1P30531 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SLC6A1P30531 SMPD5-203ENST00000639008 1464 ntBASIC19.21■□□□□ 0.67
SLC6A1P30531 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
SLC6A1P30531 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SLC6A1P30531 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms