Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC23.68■■□□□ 1.38
BDNFP23560 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC23.68■■□□□ 1.38
BDNFP23560 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
BDNFP23560 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
BDNFP23560 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
BDNFP23560 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
BDNFP23560 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC23.68■■□□□ 1.38
BDNFP23560 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
BDNFP23560 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
BDNFP23560 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
BDNFP23560 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
BDNFP23560 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
BDNFP23560 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
BDNFP23560 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
BDNFP23560 FP325331.1-202ENST00000623531 1380 ntBASIC23.67■■□□□ 1.38
BDNFP23560 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
BDNFP23560 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
BDNFP23560 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC23.67■■□□□ 1.38
BDNFP23560 AC136469.2-201ENST00000623944 1028 ntBASIC23.67■■□□□ 1.38
BDNFP23560 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
BDNFP23560 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
BDNFP23560 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC23.67■■□□□ 1.38
BDNFP23560 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC23.67■■□□□ 1.38
BDNFP23560 PKM-204ENST00000449901 2526 ntTSL 2 BASIC23.67■■□□□ 1.38
BDNFP23560 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC23.67■■□□□ 1.38
BDNFP23560 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
BDNFP23560 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC23.67■■□□□ 1.38
BDNFP23560 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
BDNFP23560 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC23.66■■□□□ 1.38
BDNFP23560 AP001330.3-201ENST00000520123 633 ntBASIC23.66■■□□□ 1.38
BDNFP23560 AF213884.3-201ENST00000563833 479 ntBASIC23.66■■□□□ 1.38
BDNFP23560 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
BDNFP23560 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
BDNFP23560 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
BDNFP23560 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC23.65■■□□□ 1.38
BDNFP23560 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
BDNFP23560 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC23.65■■□□□ 1.38
BDNFP23560 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC23.65■■□□□ 1.38
BDNFP23560 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC23.65■■□□□ 1.38
BDNFP23560 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC23.65■■□□□ 1.38
BDNFP23560 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC23.65■■□□□ 1.38
BDNFP23560 AL136967.2-201ENST00000623968 743 ntBASIC23.65■■□□□ 1.38
BDNFP23560 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
BDNFP23560 AC079630.1-202ENST00000618127 1840 ntBASIC23.65■■□□□ 1.38
BDNFP23560 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
BDNFP23560 LINC01529-204ENST00000636474 1715 ntBASIC23.64■■□□□ 1.38
BDNFP23560 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
BDNFP23560 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC23.64■■□□□ 1.37
BDNFP23560 DUX4L4-201ENST00000566884 1269 ntBASIC23.64■■□□□ 1.37
BDNFP23560 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.37
BDNFP23560 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.37
BDNFP23560 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
BDNFP23560 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC23.64■■□□□ 1.37
BDNFP23560 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
BDNFP23560 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC23.63■■□□□ 1.37
BDNFP23560 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
BDNFP23560 H19-210ENST00000439725 1929 ntTSL 2 BASIC23.63■■□□□ 1.37
BDNFP23560 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
BDNFP23560 EBPL-204ENST00000378272 766 ntTSL 3 BASIC23.63■■□□□ 1.37
BDNFP23560 MIR939-201ENST00000401314 82 ntBASIC23.63■■□□□ 1.37
BDNFP23560 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC23.63■■□□□ 1.37
BDNFP23560 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC23.63■■□□□ 1.37
BDNFP23560 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
BDNFP23560 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC23.63■■□□□ 1.37
BDNFP23560 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
BDNFP23560 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
BDNFP23560 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
BDNFP23560 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
BDNFP23560 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC23.62■■□□□ 1.37
BDNFP23560 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
BDNFP23560 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
BDNFP23560 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
BDNFP23560 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC23.62■■□□□ 1.37
BDNFP23560 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
BDNFP23560 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC23.62■■□□□ 1.37
BDNFP23560 MAG-206ENST00000597035 542 ntTSL 4 BASIC23.62■■□□□ 1.37
BDNFP23560 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
BDNFP23560 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
BDNFP23560 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
BDNFP23560 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
BDNFP23560 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC23.62■■□□□ 1.37
BDNFP23560 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
BDNFP23560 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
BDNFP23560 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC23.61■■□□□ 1.37
BDNFP23560 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
BDNFP23560 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC23.61■■□□□ 1.37
BDNFP23560 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC23.61■■□□□ 1.37
BDNFP23560 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
BDNFP23560 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC23.61■■□□□ 1.37
BDNFP23560 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
BDNFP23560 HYI-206ENST00000372434 1025 ntTSL 5 BASIC23.61■■□□□ 1.37
BDNFP23560 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC23.61■■□□□ 1.37
BDNFP23560 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC23.61■■□□□ 1.37
BDNFP23560 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC23.61■■□□□ 1.37
BDNFP23560 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
BDNFP23560 AC008764.7-201ENST00000593779 1081 ntBASIC23.61■■□□□ 1.37
BDNFP23560 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC23.61■■□□□ 1.37
BDNFP23560 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC23.61■■□□□ 1.37
BDNFP23560 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC23.61■■□□□ 1.37
BDNFP23560 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC23.61■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms