Protein–RNA interactions for Protein: P18848

ATF4, Cyclic AMP-dependent transcription factor ATF-4, humanhuman

Predicted RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF4P18848 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
ATF4P18848 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
ATF4P18848 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
ATF4P18848 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.56■□□□□ 0.56
ATF4P18848 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
ATF4P18848 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
ATF4P18848 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
ATF4P18848 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
ATF4P18848 TERT-206ENST00000508104 2486 ntTSL 5 BASIC18.56■□□□□ 0.56
ATF4P18848 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.56■□□□□ 0.56
ATF4P18848 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
ATF4P18848 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
ATF4P18848 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
ATF4P18848 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
ATF4P18848 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.55■□□□□ 0.56
ATF4P18848 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC18.55■□□□□ 0.56
ATF4P18848 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
ATF4P18848 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
ATF4P18848 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.55■□□□□ 0.56
ATF4P18848 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC18.54■□□□□ 0.56
ATF4P18848 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
ATF4P18848 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
ATF4P18848 ABHD17AP3-201ENST00000503096 1137 ntBASIC18.54■□□□□ 0.56
ATF4P18848 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
ATF4P18848 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC18.54■□□□□ 0.56
ATF4P18848 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC18.54■□□□□ 0.56
ATF4P18848 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
ATF4P18848 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC18.54■□□□□ 0.56
ATF4P18848 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.54■□□□□ 0.56
ATF4P18848 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
ATF4P18848 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ATF4P18848 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ATF4P18848 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
ATF4P18848 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
ATF4P18848 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.53■□□□□ 0.56
ATF4P18848 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
ATF4P18848 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
ATF4P18848 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
ATF4P18848 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ATF4P18848 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
ATF4P18848 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
ATF4P18848 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
ATF4P18848 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
ATF4P18848 CHST11-203ENST00000547956 936 ntTSL 2 BASIC18.53■□□□□ 0.56
ATF4P18848 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC18.53■□□□□ 0.56
ATF4P18848 AL359258.2-201ENST00000564063 1566 ntBASIC18.53■□□□□ 0.56
ATF4P18848 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
ATF4P18848 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
ATF4P18848 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
ATF4P18848 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
ATF4P18848 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
ATF4P18848 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
ATF4P18848 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ATF4P18848 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ATF4P18848 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ATF4P18848 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
ATF4P18848 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
ATF4P18848 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.52■□□□□ 0.56
ATF4P18848 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.52■□□□□ 0.56
ATF4P18848 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
ATF4P18848 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC18.52■□□□□ 0.56
ATF4P18848 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
ATF4P18848 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
ATF4P18848 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
ATF4P18848 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
ATF4P18848 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
ATF4P18848 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
ATF4P18848 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
ATF4P18848 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.52■□□□□ 0.55
ATF4P18848 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
ATF4P18848 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
ATF4P18848 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
ATF4P18848 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.51■□□□□ 0.55
ATF4P18848 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ATF4P18848 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ATF4P18848 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
ATF4P18848 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC18.51■□□□□ 0.55
ATF4P18848 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
ATF4P18848 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ATF4P18848 ECEL1P1-201ENST00000373592 1742 ntBASIC18.51■□□□□ 0.55
ATF4P18848 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
ATF4P18848 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ATF4P18848 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ATF4P18848 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
ATF4P18848 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.51■□□□□ 0.55
ATF4P18848 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
ATF4P18848 AP003733.4-201ENST00000623785 1697 ntBASIC18.5■□□□□ 0.55
ATF4P18848 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ATF4P18848 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
ATF4P18848 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
ATF4P18848 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC18.5■□□□□ 0.55
ATF4P18848 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
ATF4P18848 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
ATF4P18848 SRP68-213ENST00000629930 165 ntTSL 5 BASIC18.5■□□□□ 0.55
ATF4P18848 BRD4-212ENST00000630599 726 ntTSL 2 BASIC18.5■□□□□ 0.55
ATF4P18848 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
ATF4P18848 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ATF4P18848 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ATF4P18848 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
ATF4P18848 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms