Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCNAP12004 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.73■■□□□ 1.07
PCNAP12004 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCNAP12004 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.73■■□□□ 1.07
PCNAP12004 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
PCNAP12004 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.73■■□□□ 1.07
PCNAP12004 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
PCNAP12004 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
PCNAP12004 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCNAP12004 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
PCNAP12004 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCNAP12004 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCNAP12004 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.72■■□□□ 1.07
PCNAP12004 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCNAP12004 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.72■■□□□ 1.07
PCNAP12004 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.72■■□□□ 1.07
PCNAP12004 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCNAP12004 TSPY9P-201ENST00000440215 945 ntBASIC21.72■■□□□ 1.07
PCNAP12004 TSPY11P-201ENST00000442607 1045 ntBASIC21.72■■□□□ 1.07
PCNAP12004 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.72■■□□□ 1.07
PCNAP12004 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCNAP12004 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCNAP12004 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCNAP12004 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PCNAP12004 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PCNAP12004 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
PCNAP12004 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.71■■□□□ 1.07
PCNAP12004 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.71■■□□□ 1.07
PCNAP12004 MTDHP2-201ENST00000601468 714 ntBASIC21.71■■□□□ 1.07
PCNAP12004 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCNAP12004 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCNAP12004 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
PCNAP12004 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCNAP12004 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PCNAP12004 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.71■■□□□ 1.07
PCNAP12004 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PCNAP12004 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
PCNAP12004 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCNAP12004 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCNAP12004 AC092068.2-201ENST00000590491 1708 ntBASIC21.7■■□□□ 1.06
PCNAP12004 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
PCNAP12004 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
PCNAP12004 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
PCNAP12004 MIR6722-201ENST00000617286 78 ntBASIC21.7■■□□□ 1.06
PCNAP12004 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.7■■□□□ 1.06
PCNAP12004 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
PCNAP12004 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.7■■□□□ 1.06
PCNAP12004 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PCNAP12004 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.69■■□□□ 1.06
PCNAP12004 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PCNAP12004 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
PCNAP12004 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.69■■□□□ 1.06
PCNAP12004 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PCNAP12004 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
PCNAP12004 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PCNAP12004 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PCNAP12004 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
PCNAP12004 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
PCNAP12004 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PCNAP12004 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PCNAP12004 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PCNAP12004 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
PCNAP12004 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PCNAP12004 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCNAP12004 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCNAP12004 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.68■■□□□ 1.06
PCNAP12004 AC005703.6-201ENST00000623265 1329 ntBASIC21.68■■□□□ 1.06
PCNAP12004 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCNAP12004 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCNAP12004 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
PCNAP12004 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
PCNAP12004 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.68■■□□□ 1.06
PCNAP12004 CLDN5-201ENST00000403084 2357 ntBASIC21.68■■□□□ 1.06
PCNAP12004 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
PCNAP12004 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PCNAP12004 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCNAP12004 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.67■■□□□ 1.06
PCNAP12004 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCNAP12004 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCNAP12004 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.67■■□□□ 1.06
PCNAP12004 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCNAP12004 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.67■■□□□ 1.06
PCNAP12004 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.67■■□□□ 1.06
PCNAP12004 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCNAP12004 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCNAP12004 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCNAP12004 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCNAP12004 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PCNAP12004 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
PCNAP12004 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCNAP12004 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PCNAP12004 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCNAP12004 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.66■■□□□ 1.06
PCNAP12004 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCNAP12004 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PCNAP12004 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.66■■□□□ 1.06
PCNAP12004 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCNAP12004 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCNAP12004 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCNAP12004 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms