Protein–RNA interactions for Protein: P03956

MMP1, Interstitial collagenase, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP1P03956 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC25.85■■□□□ 1.73
MMP1P03956 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC25.84■■□□□ 1.73
MMP1P03956 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC25.84■■□□□ 1.73
MMP1P03956 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC25.84■■□□□ 1.73
MMP1P03956 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC25.84■■□□□ 1.73
MMP1P03956 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC25.84■■□□□ 1.73
MMP1P03956 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC25.84■■□□□ 1.73
MMP1P03956 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC25.83■■□□□ 1.73
MMP1P03956 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
MMP1P03956 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC25.83■■□□□ 1.73
MMP1P03956 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC25.83■■□□□ 1.73
MMP1P03956 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC25.83■■□□□ 1.73
MMP1P03956 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC25.83■■□□□ 1.73
MMP1P03956 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
MMP1P03956 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC25.83■■□□□ 1.72
MMP1P03956 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
MMP1P03956 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
MMP1P03956 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC25.82■■□□□ 1.72
MMP1P03956 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC25.82■■□□□ 1.72
MMP1P03956 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
MMP1P03956 AC144652.1-201ENST00000609974 1624 ntBASIC25.81■■□□□ 1.72
MMP1P03956 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC25.81■■□□□ 1.72
MMP1P03956 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
MMP1P03956 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
MMP1P03956 AL353803.4-201ENST00000565882 1934 ntBASIC25.81■■□□□ 1.72
MMP1P03956 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
MMP1P03956 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC25.81■■□□□ 1.72
MMP1P03956 MIR638-201ENST00000385237 100 ntBASIC25.81■■□□□ 1.72
MMP1P03956 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
MMP1P03956 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC25.81■■□□□ 1.72
MMP1P03956 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC25.81■■□□□ 1.72
MMP1P03956 AC009102.2-201ENST00000606772 1639 ntBASIC25.81■■□□□ 1.72
MMP1P03956 AC133561.1-201ENST00000568600 2415 ntBASIC25.8■■□□□ 1.72
MMP1P03956 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
MMP1P03956 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
MMP1P03956 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC25.8■■□□□ 1.72
MMP1P03956 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
MMP1P03956 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
MMP1P03956 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC25.8■■□□□ 1.72
MMP1P03956 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC25.8■■□□□ 1.72
MMP1P03956 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
MMP1P03956 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
MMP1P03956 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC25.79■■□□□ 1.72
MMP1P03956 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
MMP1P03956 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC25.79■■□□□ 1.72
MMP1P03956 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
MMP1P03956 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC25.79■■□□□ 1.72
MMP1P03956 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
MMP1P03956 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC25.78■■□□□ 1.72
MMP1P03956 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC25.78■■□□□ 1.72
MMP1P03956 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
MMP1P03956 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
MMP1P03956 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.77■■□□□ 1.72
MMP1P03956 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC25.77■■□□□ 1.72
MMP1P03956 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
MMP1P03956 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
MMP1P03956 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
MMP1P03956 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
MMP1P03956 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
MMP1P03956 ASB1-202ENST00000409297 878 ntTSL 5 BASIC25.76■■□□□ 1.71
MMP1P03956 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC25.76■■□□□ 1.71
MMP1P03956 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC25.76■■□□□ 1.71
MMP1P03956 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
MMP1P03956 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC25.76■■□□□ 1.71
MMP1P03956 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC25.76■■□□□ 1.71
MMP1P03956 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
MMP1P03956 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC25.75■■□□□ 1.71
MMP1P03956 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
MMP1P03956 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
MMP1P03956 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC25.75■■□□□ 1.71
MMP1P03956 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC25.75■■□□□ 1.71
MMP1P03956 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC25.75■■□□□ 1.71
MMP1P03956 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC25.74■■□□□ 1.71
MMP1P03956 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC25.74■■□□□ 1.71
MMP1P03956 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
MMP1P03956 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC25.74■■□□□ 1.71
MMP1P03956 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC25.74■■□□□ 1.71
MMP1P03956 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC25.74■■□□□ 1.71
MMP1P03956 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC25.74■■□□□ 1.71
MMP1P03956 AC012676.1-201ENST00000574705 1949 ntBASIC25.74■■□□□ 1.71
MMP1P03956 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC25.74■■□□□ 1.71
MMP1P03956 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
MMP1P03956 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
MMP1P03956 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC25.73■■□□□ 1.71
MMP1P03956 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC25.73■■□□□ 1.71
MMP1P03956 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC25.73■■□□□ 1.71
MMP1P03956 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
MMP1P03956 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC25.73■■□□□ 1.71
MMP1P03956 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC25.73■■□□□ 1.71
MMP1P03956 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC25.73■■□□□ 1.71
MMP1P03956 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC25.73■■□□□ 1.71
MMP1P03956 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC25.73■■□□□ 1.71
MMP1P03956 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC25.73■■□□□ 1.71
MMP1P03956 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
MMP1P03956 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
MMP1P03956 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC25.72■■□□□ 1.71
MMP1P03956 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC25.72■■□□□ 1.71
MMP1P03956 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC25.72■■□□□ 1.71
MMP1P03956 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
MMP1P03956 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC25.72■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms