Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 DUX4L24-201ENST00000617576 1269 ntBASIC16.82■□□□□ 0.28
HLA-DQA1P01909 DUX4L22-201ENST00000618238 1269 ntBASIC16.82■□□□□ 0.28
HLA-DQA1P01909 DUX4L20-201ENST00000619712 1269 ntBASIC16.82■□□□□ 0.28
HLA-DQA1P01909 DUX4L21-201ENST00000622058 1269 ntBASIC16.82■□□□□ 0.28
HLA-DQA1P01909 DUX4L10-201ENST00000622460 1267 ntBASIC16.82■□□□□ 0.28
HLA-DQA1P01909 DUX4L25-201ENST00000624915 1269 ntBASIC16.82■□□□□ 0.28
HLA-DQA1P01909 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
HLA-DQA1P01909 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
HLA-DQA1P01909 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC16.81■□□□□ 0.28
HLA-DQA1P01909 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC16.81■□□□□ 0.28
HLA-DQA1P01909 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DQA1P01909 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DQA1P01909 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
HLA-DQA1P01909 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DQA1P01909 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DQA1P01909 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DQA1P01909 MIR7108-201ENST00000614319 87 ntBASIC16.81■□□□□ 0.28
HLA-DQA1P01909 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
HLA-DQA1P01909 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DQA1P01909 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
HLA-DQA1P01909 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DQA1P01909 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DQA1P01909 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DQA1P01909 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DQA1P01909 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DQA1P01909 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DQA1P01909 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
HLA-DQA1P01909 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
HLA-DQA1P01909 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
HLA-DQA1P01909 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DQA1P01909 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DQA1P01909 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DQA1P01909 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DQA1P01909 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DQA1P01909 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DQA1P01909 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
HLA-DQA1P01909 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
HLA-DQA1P01909 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC16.8■□□□□ 0.28
HLA-DQA1P01909 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DQA1P01909 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DQA1P01909 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DQA1P01909 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
HLA-DQA1P01909 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DQA1P01909 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
HLA-DQA1P01909 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DQA1P01909 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DQA1P01909 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC16.79■□□□□ 0.28
HLA-DQA1P01909 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DQA1P01909 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DQA1P01909 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DQA1P01909 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC16.79■□□□□ 0.28
HLA-DQA1P01909 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DQA1P01909 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DQA1P01909 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DQA1P01909 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
HLA-DQA1P01909 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DQA1P01909 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
HLA-DQA1P01909 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DQA1P01909 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC16.79■□□□□ 0.28
HLA-DQA1P01909 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DQA1P01909 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC16.78■□□□□ 0.28
HLA-DQA1P01909 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DQA1P01909 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DQA1P01909 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC16.78■□□□□ 0.28
HLA-DQA1P01909 AGPS-202ENST00000409888 815 ntTSL 4 BASIC16.78■□□□□ 0.28
HLA-DQA1P01909 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC16.78■□□□□ 0.28
HLA-DQA1P01909 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DQA1P01909 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
HLA-DQA1P01909 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DQA1P01909 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC16.77■□□□□ 0.28
HLA-DQA1P01909 MIR219A2-201ENST00000608502 1504 ntBASIC16.77■□□□□ 0.28
HLA-DQA1P01909 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
HLA-DQA1P01909 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HLA-DQA1P01909 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HLA-DQA1P01909 HES6-205ENST00000409356 528 ntTSL 2 BASIC16.77■□□□□ 0.28
HLA-DQA1P01909 PVT1-219ENST00000523427 938 ntTSL 3 BASIC16.77■□□□□ 0.28
HLA-DQA1P01909 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HLA-DQA1P01909 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HLA-DQA1P01909 AC026310.3-201ENST00000625186 2373 ntBASIC16.77■□□□□ 0.27
HLA-DQA1P01909 AC139530.1-201ENST00000575312 1977 ntBASIC16.77■□□□□ 0.27
HLA-DQA1P01909 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HLA-DQA1P01909 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DQA1P01909 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
HLA-DQA1P01909 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC16.76■□□□□ 0.27
HLA-DQA1P01909 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DQA1P01909 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC16.76■□□□□ 0.27
HLA-DQA1P01909 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC16.76■□□□□ 0.27
HLA-DQA1P01909 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC16.76■□□□□ 0.27
HLA-DQA1P01909 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC16.76■□□□□ 0.27
HLA-DQA1P01909 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC16.76■□□□□ 0.27
HLA-DQA1P01909 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DQA1P01909 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC16.76■□□□□ 0.27
HLA-DQA1P01909 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DQA1P01909 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC16.76■□□□□ 0.27
HLA-DQA1P01909 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DQA1P01909 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DQA1P01909 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DQA1P01909 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC16.76■□□□□ 0.27
HLA-DQA1P01909 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DQA1P01909 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms