Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CPSF4LA6NMK7 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CPSF4LA6NMK7 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CPSF4LA6NMK7 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.63■□□□□ 0.89
CPSF4LA6NMK7 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CPSF4LA6NMK7 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CPSF4LA6NMK7 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.63■□□□□ 0.89
CPSF4LA6NMK7 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
CPSF4LA6NMK7 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CPSF4LA6NMK7 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CPSF4LA6NMK7 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CPSF4LA6NMK7 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
CPSF4LA6NMK7 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
CPSF4LA6NMK7 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.62■□□□□ 0.89
CPSF4LA6NMK7 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CPSF4LA6NMK7 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.62■□□□□ 0.89
CPSF4LA6NMK7 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CPSF4LA6NMK7 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CPSF4LA6NMK7 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CPSF4LA6NMK7 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
CPSF4LA6NMK7 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.61■□□□□ 0.89
CPSF4LA6NMK7 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CPSF4LA6NMK7 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CPSF4LA6NMK7 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CPSF4LA6NMK7 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CPSF4LA6NMK7 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CPSF4LA6NMK7 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CPSF4LA6NMK7 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CPSF4LA6NMK7 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CPSF4LA6NMK7 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.6■□□□□ 0.89
CPSF4LA6NMK7 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CPSF4LA6NMK7 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CPSF4LA6NMK7 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.6■□□□□ 0.89
CPSF4LA6NMK7 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CPSF4LA6NMK7 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.6■□□□□ 0.89
CPSF4LA6NMK7 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CPSF4LA6NMK7 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
CPSF4LA6NMK7 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
CPSF4LA6NMK7 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CPSF4LA6NMK7 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC20.59■□□□□ 0.89
CPSF4LA6NMK7 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.59■□□□□ 0.89
CPSF4LA6NMK7 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CPSF4LA6NMK7 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CPSF4LA6NMK7 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.59■□□□□ 0.89
CPSF4LA6NMK7 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.59■□□□□ 0.89
CPSF4LA6NMK7 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
CPSF4LA6NMK7 SNX5-217ENST00000606557 1087 ntBASIC20.59■□□□□ 0.89
CPSF4LA6NMK7 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CPSF4LA6NMK7 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CPSF4LA6NMK7 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CPSF4LA6NMK7 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.58■□□□□ 0.89
CPSF4LA6NMK7 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.58■□□□□ 0.89
CPSF4LA6NMK7 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.58■□□□□ 0.89
CPSF4LA6NMK7 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.58■□□□□ 0.89
CPSF4LA6NMK7 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.58■□□□□ 0.89
CPSF4LA6NMK7 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CPSF4LA6NMK7 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CPSF4LA6NMK7 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CPSF4LA6NMK7 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CPSF4LA6NMK7 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CPSF4LA6NMK7 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CPSF4LA6NMK7 EP400NL-214ENST00000641289 2402 ntBASIC20.57■□□□□ 0.88
CPSF4LA6NMK7 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CPSF4LA6NMK7 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CPSF4LA6NMK7 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CPSF4LA6NMK7 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.57■□□□□ 0.88
CPSF4LA6NMK7 AL031848.2-201ENST00000607670 837 ntBASIC20.57■□□□□ 0.88
CPSF4LA6NMK7 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
CPSF4LA6NMK7 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.57■□□□□ 0.88
CPSF4LA6NMK7 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.57■□□□□ 0.88
CPSF4LA6NMK7 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CPSF4LA6NMK7 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
CPSF4LA6NMK7 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CPSF4LA6NMK7 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CPSF4LA6NMK7 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CPSF4LA6NMK7 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CPSF4LA6NMK7 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
CPSF4LA6NMK7 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.56■□□□□ 0.88
CPSF4LA6NMK7 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CPSF4LA6NMK7 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.56■□□□□ 0.88
CPSF4LA6NMK7 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CPSF4LA6NMK7 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.56■□□□□ 0.88
CPSF4LA6NMK7 AL353803.4-201ENST00000565882 1934 ntBASIC20.56■□□□□ 0.88
CPSF4LA6NMK7 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CPSF4LA6NMK7 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.55■□□□□ 0.88
CPSF4LA6NMK7 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CPSF4LA6NMK7 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CPSF4LA6NMK7 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.55■□□□□ 0.88
CPSF4LA6NMK7 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.55■□□□□ 0.88
CPSF4LA6NMK7 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.55■□□□□ 0.88
CPSF4LA6NMK7 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.55■□□□□ 0.88
CPSF4LA6NMK7 AC137630.3-201ENST00000607245 391 ntBASIC20.55■□□□□ 0.88
CPSF4LA6NMK7 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.55■□□□□ 0.88
CPSF4LA6NMK7 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CPSF4LA6NMK7 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
CPSF4LA6NMK7 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CPSF4LA6NMK7 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.55■□□□□ 0.88
CPSF4LA6NMK7 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CPSF4LA6NMK7 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CPSF4LA6NMK7 GUSBP5-202ENST00000510805 1989 ntBASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms