Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRAV39A0A0B4J263 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRAV39A0A0B4J263 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRAV39A0A0B4J263 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TRAV39A0A0B4J263 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRAV39A0A0B4J263 RNF146-205ENST00000477776 762 ntTSL 3 BASIC18.73■□□□□ 0.59
TRAV39A0A0B4J263 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC18.73■□□□□ 0.59
TRAV39A0A0B4J263 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC18.73■□□□□ 0.59
TRAV39A0A0B4J263 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRAV39A0A0B4J263 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC18.73■□□□□ 0.59
TRAV39A0A0B4J263 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRAV39A0A0B4J263 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRAV39A0A0B4J263 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC18.73■□□□□ 0.59
TRAV39A0A0B4J263 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
TRAV39A0A0B4J263 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRAV39A0A0B4J263 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRAV39A0A0B4J263 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRAV39A0A0B4J263 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TRAV39A0A0B4J263 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRAV39A0A0B4J263 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC18.72■□□□□ 0.59
TRAV39A0A0B4J263 BX664725.1-201ENST00000438252 379 ntBASIC18.72■□□□□ 0.59
TRAV39A0A0B4J263 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC18.72■□□□□ 0.59
TRAV39A0A0B4J263 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRAV39A0A0B4J263 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRAV39A0A0B4J263 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC18.72■□□□□ 0.59
TRAV39A0A0B4J263 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
TRAV39A0A0B4J263 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV39A0A0B4J263 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV39A0A0B4J263 AC021242.3-201ENST00000607598 1377 ntBASIC18.71■□□□□ 0.59
TRAV39A0A0B4J263 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC18.71■□□□□ 0.59
TRAV39A0A0B4J263 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV39A0A0B4J263 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC18.71■□□□□ 0.59
TRAV39A0A0B4J263 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
TRAV39A0A0B4J263 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC18.71■□□□□ 0.59
TRAV39A0A0B4J263 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV39A0A0B4J263 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV39A0A0B4J263 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC18.71■□□□□ 0.59
TRAV39A0A0B4J263 AC233723.2-201ENST00000623798 2106 ntBASIC18.71■□□□□ 0.59
TRAV39A0A0B4J263 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV39A0A0B4J263 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC18.7■□□□□ 0.58
TRAV39A0A0B4J263 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV39A0A0B4J263 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV39A0A0B4J263 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV39A0A0B4J263 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV39A0A0B4J263 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV39A0A0B4J263 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV39A0A0B4J263 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC18.7■□□□□ 0.58
TRAV39A0A0B4J263 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV39A0A0B4J263 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV39A0A0B4J263 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV39A0A0B4J263 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC18.7■□□□□ 0.58
TRAV39A0A0B4J263 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
TRAV39A0A0B4J263 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC18.7■□□□□ 0.58
TRAV39A0A0B4J263 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC18.7■□□□□ 0.58
TRAV39A0A0B4J263 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
TRAV39A0A0B4J263 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
TRAV39A0A0B4J263 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
TRAV39A0A0B4J263 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TRAV39A0A0B4J263 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC18.69■□□□□ 0.58
TRAV39A0A0B4J263 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
TRAV39A0A0B4J263 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC18.69■□□□□ 0.58
TRAV39A0A0B4J263 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRAV39A0A0B4J263 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
TRAV39A0A0B4J263 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
TRAV39A0A0B4J263 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRAV39A0A0B4J263 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRAV39A0A0B4J263 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TRAV39A0A0B4J263 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
TRAV39A0A0B4J263 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRAV39A0A0B4J263 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC18.69■□□□□ 0.58
TRAV39A0A0B4J263 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC18.69■□□□□ 0.58
TRAV39A0A0B4J263 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAV39A0A0B4J263 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAV39A0A0B4J263 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAV39A0A0B4J263 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TRAV39A0A0B4J263 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC18.68■□□□□ 0.58
TRAV39A0A0B4J263 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TRAV39A0A0B4J263 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TRAV39A0A0B4J263 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAV39A0A0B4J263 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
TRAV39A0A0B4J263 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC18.68■□□□□ 0.58
TRAV39A0A0B4J263 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAV39A0A0B4J263 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAV39A0A0B4J263 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC18.68■□□□□ 0.58
TRAV39A0A0B4J263 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAV39A0A0B4J263 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC18.67■□□□□ 0.58
TRAV39A0A0B4J263 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV39A0A0B4J263 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
TRAV39A0A0B4J263 AL353803.4-201ENST00000565882 1934 ntBASIC18.67■□□□□ 0.58
TRAV39A0A0B4J263 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV39A0A0B4J263 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
TRAV39A0A0B4J263 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV39A0A0B4J263 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV39A0A0B4J263 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
TRAV39A0A0B4J263 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV39A0A0B4J263 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV39A0A0B4J263 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC18.67■□□□□ 0.58
TRAV39A0A0B4J263 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
TRAV39A0A0B4J263 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRAV39A0A0B4J263 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms