Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC24.14■■□□□ 1.45
Cdc40Q9DC48 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Cdc40Q9DC48 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC24.07■■□□□ 1.44
Cdc40Q9DC48 Zfp131-205ENSMUST00000223812 663 ntBASIC24.06■■□□□ 1.44
Cdc40Q9DC48 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
Cdc40Q9DC48 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC24.05■■□□□ 1.44
Cdc40Q9DC48 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC24.05■■□□□ 1.44
Cdc40Q9DC48 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC24.05■■□□□ 1.44
Cdc40Q9DC48 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Cdc40Q9DC48 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.43
Cdc40Q9DC48 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Cdc40Q9DC48 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Cdc40Q9DC48 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Cdc40Q9DC48 Mipep-204ENSMUST00000225043 1548 ntBASIC23.98■■□□□ 1.43
Cdc40Q9DC48 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC23.97■■□□□ 1.43
Cdc40Q9DC48 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
Cdc40Q9DC48 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Cdc40Q9DC48 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Cdc40Q9DC48 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
Cdc40Q9DC48 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Cdc40Q9DC48 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Cdc40Q9DC48 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Cdc40Q9DC48 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Cdc40Q9DC48 Gm16148-201ENSMUST00000119653 893 ntBASIC23.9■■□□□ 1.42
Cdc40Q9DC48 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Cdc40Q9DC48 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
Cdc40Q9DC48 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Cdc40Q9DC48 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC23.87■■□□□ 1.41
Cdc40Q9DC48 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC23.87■■□□□ 1.41
Cdc40Q9DC48 Gm2415-204ENSMUST00000190235 2004 ntBASIC23.86■■□□□ 1.41
Cdc40Q9DC48 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC23.86■■□□□ 1.41
Cdc40Q9DC48 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Cdc40Q9DC48 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
Cdc40Q9DC48 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Cdc40Q9DC48 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Cdc40Q9DC48 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC23.81■■□□□ 1.4
Cdc40Q9DC48 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Cdc40Q9DC48 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Cdc40Q9DC48 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Cdc40Q9DC48 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
Cdc40Q9DC48 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Cdc40Q9DC48 Peli2-204ENSMUST00000226513 1320 ntBASIC23.77■■□□□ 1.4
Cdc40Q9DC48 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
Cdc40Q9DC48 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Cdc40Q9DC48 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
Cdc40Q9DC48 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Cdc40Q9DC48 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
Cdc40Q9DC48 Gm6658-202ENSMUST00000209493 1885 ntBASIC23.71■■□□□ 1.39
Cdc40Q9DC48 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Cdc40Q9DC48 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Cdc40Q9DC48 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Cdc40Q9DC48 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Cdc40Q9DC48 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Cdc40Q9DC48 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
Cdc40Q9DC48 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC23.64■■□□□ 1.37
Cdc40Q9DC48 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Cdc40Q9DC48 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Cdc40Q9DC48 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
Cdc40Q9DC48 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Cdc40Q9DC48 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC23.6■■□□□ 1.37
Cdc40Q9DC48 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
Cdc40Q9DC48 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
Cdc40Q9DC48 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
Cdc40Q9DC48 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.37
Cdc40Q9DC48 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Cdc40Q9DC48 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Cdc40Q9DC48 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC23.57■■□□□ 1.36
Cdc40Q9DC48 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
Cdc40Q9DC48 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
Cdc40Q9DC48 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Cdc40Q9DC48 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC23.55■■□□□ 1.36
Cdc40Q9DC48 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Cdc40Q9DC48 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC23.54■■□□□ 1.36
Cdc40Q9DC48 Tdp2-203ENSMUST00000223804 1136 ntBASIC23.53■■□□□ 1.36
Cdc40Q9DC48 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
Cdc40Q9DC48 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC23.53■■□□□ 1.36
Cdc40Q9DC48 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Cdc40Q9DC48 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC23.51■■□□□ 1.35
Cdc40Q9DC48 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC23.49■■□□□ 1.35
Cdc40Q9DC48 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Cdc40Q9DC48 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Cdc40Q9DC48 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Cdc40Q9DC48 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
Cdc40Q9DC48 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC23.48■■□□□ 1.35
Cdc40Q9DC48 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Cdc40Q9DC48 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC23.45■■□□□ 1.35
Cdc40Q9DC48 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Cdc40Q9DC48 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC23.42■■□□□ 1.34
Cdc40Q9DC48 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC23.42■■□□□ 1.34
Cdc40Q9DC48 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
Cdc40Q9DC48 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC23.42■■□□□ 1.34
Cdc40Q9DC48 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC23.4■■□□□ 1.34
Cdc40Q9DC48 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC23.39■■□□□ 1.33
Cdc40Q9DC48 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Cdc40Q9DC48 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
Cdc40Q9DC48 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Cdc40Q9DC48 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
Cdc40Q9DC48 Gm45855-201ENSMUST00000212546 880 ntBASIC23.34■■□□□ 1.33
Cdc40Q9DC48 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC23.33■■□□□ 1.33
Cdc40Q9DC48 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Retrieved 100 of 76,532 protein–RNA pairs in 18.6 ms