Protein–RNA interactions for Protein: Q99ML9

Rnf111, E3 ubiquitin-protein ligase Arkadia, mousemouse

Predictions only

Length 989 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf111Q99ML9 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC25.28■■□□□ 1.64
Rnf111Q99ML9 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
Rnf111Q99ML9 Zxda-201ENSMUST00000117281 2621 ntBASIC25.22■■□□□ 1.63
Rnf111Q99ML9 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
Rnf111Q99ML9 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
Rnf111Q99ML9 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Rnf111Q99ML9 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Rnf111Q99ML9 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC25.19■■□□□ 1.62
Rnf111Q99ML9 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
Rnf111Q99ML9 AL845457.1-201ENSMUST00000197244 68 ntBASIC25.17■■□□□ 1.62
Rnf111Q99ML9 Gm6206-201ENSMUST00000133472 2199 ntBASIC25.15■■□□□ 1.62
Rnf111Q99ML9 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC25.13■■□□□ 1.61
Rnf111Q99ML9 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Rnf111Q99ML9 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC25.12■■□□□ 1.61
Rnf111Q99ML9 Gm17082-201ENSMUST00000166043 1091 ntBASIC25.12■■□□□ 1.61
Rnf111Q99ML9 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Rnf111Q99ML9 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Rnf111Q99ML9 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Rnf111Q99ML9 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Rnf111Q99ML9 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Rnf111Q99ML9 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC25.08■■□□□ 1.61
Rnf111Q99ML9 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
Rnf111Q99ML9 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.6
Rnf111Q99ML9 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Rnf111Q99ML9 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC25.06■■□□□ 1.6
Rnf111Q99ML9 Gm9905-201ENSMUST00000065740 1845 ntBASIC25.05■■□□□ 1.6
Rnf111Q99ML9 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
Rnf111Q99ML9 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
Rnf111Q99ML9 Gm26115-201ENSMUST00000175605 87 ntBASIC25.05■■□□□ 1.6
Rnf111Q99ML9 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC25.04■■□□□ 1.6
Rnf111Q99ML9 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
Rnf111Q99ML9 Gm27322-201ENSMUST00000184007 104 ntBASIC25.03■■□□□ 1.6
Rnf111Q99ML9 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
Rnf111Q99ML9 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Rnf111Q99ML9 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC25■■□□□ 1.59
Rnf111Q99ML9 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Rnf111Q99ML9 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Rnf111Q99ML9 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
Rnf111Q99ML9 Gm8109-201ENSMUST00000194076 746 ntBASIC24.98■■□□□ 1.59
Rnf111Q99ML9 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
Rnf111Q99ML9 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC24.97■■□□□ 1.59
Rnf111Q99ML9 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC24.96■■□□□ 1.59
Rnf111Q99ML9 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Rnf111Q99ML9 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC24.93■■□□□ 1.58
Rnf111Q99ML9 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
Rnf111Q99ML9 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
Rnf111Q99ML9 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
Rnf111Q99ML9 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC24.88■■□□□ 1.57
Rnf111Q99ML9 Mipep-204ENSMUST00000225043 1548 ntBASIC24.87■■□□□ 1.57
Rnf111Q99ML9 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
Rnf111Q99ML9 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC24.86■■□□□ 1.57
Rnf111Q99ML9 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Rnf111Q99ML9 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC24.84■■□□□ 1.57
Rnf111Q99ML9 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC24.84■■□□□ 1.57
Rnf111Q99ML9 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC24.84■■□□□ 1.57
Rnf111Q99ML9 AC166822.3-201ENSMUST00000227394 661 ntBASIC24.82■■□□□ 1.56
Rnf111Q99ML9 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Rnf111Q99ML9 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Rnf111Q99ML9 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
Rnf111Q99ML9 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC24.78■■□□□ 1.56
Rnf111Q99ML9 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC24.78■■□□□ 1.56
Rnf111Q99ML9 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Rnf111Q99ML9 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
Rnf111Q99ML9 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Rnf111Q99ML9 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Rnf111Q99ML9 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
Rnf111Q99ML9 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Rnf111Q99ML9 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC24.74■■□□□ 1.55
Rnf111Q99ML9 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC24.74■■□□□ 1.55
Rnf111Q99ML9 Gm43445-201ENSMUST00000198564 2091 ntBASIC24.74■■□□□ 1.55
Rnf111Q99ML9 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC24.73■■□□□ 1.55
Rnf111Q99ML9 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Rnf111Q99ML9 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
Rnf111Q99ML9 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC24.71■■□□□ 1.55
Rnf111Q99ML9 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC24.7■■□□□ 1.54
Rnf111Q99ML9 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Rnf111Q99ML9 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Rnf111Q99ML9 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Rnf111Q99ML9 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC24.67■■□□□ 1.54
Rnf111Q99ML9 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Rnf111Q99ML9 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
Rnf111Q99ML9 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
Rnf111Q99ML9 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Rnf111Q99ML9 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Rnf111Q99ML9 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Rnf111Q99ML9 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Rnf111Q99ML9 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
Rnf111Q99ML9 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
Rnf111Q99ML9 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC24.61■■□□□ 1.53
Rnf111Q99ML9 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Rnf111Q99ML9 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
Rnf111Q99ML9 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Rnf111Q99ML9 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
Rnf111Q99ML9 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
Rnf111Q99ML9 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Rnf111Q99ML9 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
Rnf111Q99ML9 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Rnf111Q99ML9 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC24.55■■□□□ 1.52
Rnf111Q99ML9 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
Rnf111Q99ML9 Amer2-203ENSMUST00000225247 2662 ntBASIC24.55■■□□□ 1.52
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms