Protein–RNA interactions for Protein: Q99ML9

Rnf111, E3 ubiquitin-protein ligase Arkadia, mousemouse

Predictions only

Length 989 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf111Q99ML9 Gm25239-201ENSMUST00000174915 86 ntBASIC34.68■■■■□ 3.14
Rnf111Q99ML9 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC33.31■■■□□ 2.92
Rnf111Q99ML9 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC32.07■■■□□ 2.72
Rnf111Q99ML9 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
Rnf111Q99ML9 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
Rnf111Q99ML9 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
Rnf111Q99ML9 Psd-208ENSMUST00000224556 2034 ntBASIC31.34■■■□□ 2.61
Rnf111Q99ML9 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Rnf111Q99ML9 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
Rnf111Q99ML9 Gm15042-201ENSMUST00000120212 883 ntBASIC30.72■■■□□ 2.51
Rnf111Q99ML9 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Rnf111Q99ML9 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC30.18■■■□□ 2.42
Rnf111Q99ML9 Gm15045-201ENSMUST00000117359 883 ntBASIC30.1■■■□□ 2.41
Rnf111Q99ML9 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
Rnf111Q99ML9 Gm24109-201ENSMUST00000175489 103 ntBASIC29.85■■■□□ 2.37
Rnf111Q99ML9 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
Rnf111Q99ML9 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
Rnf111Q99ML9 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
Rnf111Q99ML9 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
Rnf111Q99ML9 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC29.5■■■□□ 2.31
Rnf111Q99ML9 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
Rnf111Q99ML9 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC29.37■■■□□ 2.29
Rnf111Q99ML9 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
Rnf111Q99ML9 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC29.23■■■□□ 2.27
Rnf111Q99ML9 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC29.16■■■□□ 2.26
Rnf111Q99ML9 Gm23366-201ENSMUST00000175022 89 ntBASIC29.02■■■□□ 2.24
Rnf111Q99ML9 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC28.97■■■□□ 2.23
Rnf111Q99ML9 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
Rnf111Q99ML9 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC28.89■■■□□ 2.22
Rnf111Q99ML9 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC28.88■■■□□ 2.21
Rnf111Q99ML9 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
Rnf111Q99ML9 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
Rnf111Q99ML9 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
Rnf111Q99ML9 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC28.77■■■□□ 2.2
Rnf111Q99ML9 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC28.72■■■□□ 2.19
Rnf111Q99ML9 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
Rnf111Q99ML9 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
Rnf111Q99ML9 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
Rnf111Q99ML9 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC28.59■■■□□ 2.17
Rnf111Q99ML9 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
Rnf111Q99ML9 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC28.47■■■□□ 2.15
Rnf111Q99ML9 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
Rnf111Q99ML9 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Rnf111Q99ML9 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
Rnf111Q99ML9 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC28.27■■■□□ 2.12
Rnf111Q99ML9 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC28.25■■■□□ 2.11
Rnf111Q99ML9 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC28.25■■■□□ 2.11
Rnf111Q99ML9 AC153911.1-202ENSMUST00000218534 1034 ntBASIC28.21■■■□□ 2.11
Rnf111Q99ML9 Gm42596-201ENSMUST00000196305 1958 ntBASIC28.1■■■□□ 2.09
Rnf111Q99ML9 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC28.07■■■□□ 2.08
Rnf111Q99ML9 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
Rnf111Q99ML9 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
Rnf111Q99ML9 Gm10524-201ENSMUST00000181931 1893 ntBASIC28.02■■■□□ 2.08
Rnf111Q99ML9 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
Rnf111Q99ML9 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC27.95■■■□□ 2.07
Rnf111Q99ML9 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC27.77■■■□□ 2.04
Rnf111Q99ML9 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC27.75■■■□□ 2.03
Rnf111Q99ML9 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
Rnf111Q99ML9 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
Rnf111Q99ML9 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC27.67■■■□□ 2.02
Rnf111Q99ML9 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
Rnf111Q99ML9 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC27.62■■■□□ 2.01
Rnf111Q99ML9 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
Rnf111Q99ML9 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
Rnf111Q99ML9 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC27.38■■□□□ 1.97
Rnf111Q99ML9 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC27.36■■□□□ 1.97
Rnf111Q99ML9 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC27.33■■□□□ 1.97
Rnf111Q99ML9 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
Rnf111Q99ML9 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.96
Rnf111Q99ML9 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Rnf111Q99ML9 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC27.31■■□□□ 1.96
Rnf111Q99ML9 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Rnf111Q99ML9 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
Rnf111Q99ML9 Gm25238-201ENSMUST00000174914 89 ntBASIC27.23■■□□□ 1.95
Rnf111Q99ML9 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC27.17■■□□□ 1.94
Rnf111Q99ML9 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Rnf111Q99ML9 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Rnf111Q99ML9 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
Rnf111Q99ML9 CT025624.2-201ENSMUST00000223609 1909 ntBASIC27.12■■□□□ 1.93
Rnf111Q99ML9 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Rnf111Q99ML9 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
Rnf111Q99ML9 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC27.02■■□□□ 1.92
Rnf111Q99ML9 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
Rnf111Q99ML9 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC26.99■■□□□ 1.91
Rnf111Q99ML9 Gm27325-201ENSMUST00000175467 74 ntBASIC26.98■■□□□ 1.91
Rnf111Q99ML9 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC26.97■■□□□ 1.91
Rnf111Q99ML9 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC26.95■■□□□ 1.9
Rnf111Q99ML9 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC26.94■■□□□ 1.9
Rnf111Q99ML9 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC26.91■■□□□ 1.9
Rnf111Q99ML9 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC26.9■■□□□ 1.9
Rnf111Q99ML9 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC26.88■■□□□ 1.89
Rnf111Q99ML9 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
Rnf111Q99ML9 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC26.86■■□□□ 1.89
Rnf111Q99ML9 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC26.86■■□□□ 1.89
Rnf111Q99ML9 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC26.8■■□□□ 1.88
Rnf111Q99ML9 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Rnf111Q99ML9 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC26.72■■□□□ 1.87
Rnf111Q99ML9 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Rnf111Q99ML9 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Rnf111Q99ML9 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
Retrieved 100 of 76,532 protein–RNA pairs in 16.1 ms