Protein–RNA interactions for Protein: Q8C2S0

Usp44, Ubiquitin carboxyl-terminal hydrolase 44, mousemouse

Predictions only

Length 711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp44Q8C2S0 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Usp44Q8C2S0 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
Usp44Q8C2S0 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC31.2■■■□□ 2.58
Usp44Q8C2S0 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Usp44Q8C2S0 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Usp44Q8C2S0 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Usp44Q8C2S0 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
Usp44Q8C2S0 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
Usp44Q8C2S0 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
Usp44Q8C2S0 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC31.08■■■□□ 2.57
Usp44Q8C2S0 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
Usp44Q8C2S0 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC31.08■■■□□ 2.57
Usp44Q8C2S0 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
Usp44Q8C2S0 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Usp44Q8C2S0 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Usp44Q8C2S0 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Usp44Q8C2S0 Gm6658-202ENSMUST00000209493 1885 ntBASIC31.05■■■□□ 2.56
Usp44Q8C2S0 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
Usp44Q8C2S0 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC30.99■■■□□ 2.55
Usp44Q8C2S0 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
Usp44Q8C2S0 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
Usp44Q8C2S0 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
Usp44Q8C2S0 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC30.95■■■□□ 2.55
Usp44Q8C2S0 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC30.94■■■□□ 2.54
Usp44Q8C2S0 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
Usp44Q8C2S0 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
Usp44Q8C2S0 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC30.93■■■□□ 2.54
Usp44Q8C2S0 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC30.91■■■□□ 2.54
Usp44Q8C2S0 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC30.9■■■□□ 2.54
Usp44Q8C2S0 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC30.89■■■□□ 2.54
Usp44Q8C2S0 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.53
Usp44Q8C2S0 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC30.85■■■□□ 2.53
Usp44Q8C2S0 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
Usp44Q8C2S0 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC30.82■■■□□ 2.52
Usp44Q8C2S0 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
Usp44Q8C2S0 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
Usp44Q8C2S0 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC30.79■■■□□ 2.52
Usp44Q8C2S0 Gm24804-201ENSMUST00000174982 85 ntBASIC30.78■■■□□ 2.52
Usp44Q8C2S0 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
Usp44Q8C2S0 Peli2-204ENSMUST00000226513 1320 ntBASIC30.77■■■□□ 2.52
Usp44Q8C2S0 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
Usp44Q8C2S0 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
Usp44Q8C2S0 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC30.75■■■□□ 2.51
Usp44Q8C2S0 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
Usp44Q8C2S0 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
Usp44Q8C2S0 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC30.73■■■□□ 2.51
Usp44Q8C2S0 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
Usp44Q8C2S0 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC30.67■■■□□ 2.5
Usp44Q8C2S0 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Usp44Q8C2S0 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC30.66■■■□□ 2.5
Usp44Q8C2S0 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC30.64■■■□□ 2.5
Usp44Q8C2S0 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
Usp44Q8C2S0 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Usp44Q8C2S0 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Usp44Q8C2S0 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
Usp44Q8C2S0 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Usp44Q8C2S0 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC30.56■■■□□ 2.48
Usp44Q8C2S0 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Usp44Q8C2S0 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
Usp44Q8C2S0 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Usp44Q8C2S0 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC30.52■■■□□ 2.48
Usp44Q8C2S0 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
Usp44Q8C2S0 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC30.49■■■□□ 2.47
Usp44Q8C2S0 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
Usp44Q8C2S0 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC30.49■■■□□ 2.47
Usp44Q8C2S0 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC30.49■■■□□ 2.47
Usp44Q8C2S0 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC30.49■■■□□ 2.47
Usp44Q8C2S0 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
Usp44Q8C2S0 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
Usp44Q8C2S0 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC30.46■■■□□ 2.47
Usp44Q8C2S0 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC30.45■■■□□ 2.47
Usp44Q8C2S0 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC30.44■■■□□ 2.46
Usp44Q8C2S0 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC30.44■■■□□ 2.46
Usp44Q8C2S0 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC30.44■■■□□ 2.46
Usp44Q8C2S0 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Usp44Q8C2S0 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC30.43■■■□□ 2.46
Usp44Q8C2S0 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC30.43■■■□□ 2.46
Usp44Q8C2S0 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
Usp44Q8C2S0 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
Usp44Q8C2S0 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
Usp44Q8C2S0 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Usp44Q8C2S0 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
Usp44Q8C2S0 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC30.39■■■□□ 2.45
Usp44Q8C2S0 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC30.38■■■□□ 2.45
Usp44Q8C2S0 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
Usp44Q8C2S0 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC30.37■■■□□ 2.45
Usp44Q8C2S0 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Usp44Q8C2S0 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC30.35■■■□□ 2.45
Usp44Q8C2S0 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Usp44Q8C2S0 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC30.35■■■□□ 2.45
Usp44Q8C2S0 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC30.35■■■□□ 2.45
Usp44Q8C2S0 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Usp44Q8C2S0 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Usp44Q8C2S0 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC30.33■■■□□ 2.45
Usp44Q8C2S0 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Usp44Q8C2S0 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Usp44Q8C2S0 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Usp44Q8C2S0 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
Usp44Q8C2S0 AC153504.1-201ENSMUST00000218379 2290 ntBASIC30.31■■■□□ 2.44
Usp44Q8C2S0 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms