Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
Smarca1Q6PGB8 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
Smarca1Q6PGB8 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
Smarca1Q6PGB8 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
Smarca1Q6PGB8 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
Smarca1Q6PGB8 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
Smarca1Q6PGB8 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
Smarca1Q6PGB8 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC29.23■■■□□ 2.27
Smarca1Q6PGB8 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
Smarca1Q6PGB8 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
Smarca1Q6PGB8 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
Smarca1Q6PGB8 Gm6658-202ENSMUST00000209493 1885 ntBASIC29.12■■■□□ 2.25
Smarca1Q6PGB8 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
Smarca1Q6PGB8 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC29.1■■■□□ 2.25
Smarca1Q6PGB8 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
Smarca1Q6PGB8 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC29.08■■■□□ 2.25
Smarca1Q6PGB8 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
Smarca1Q6PGB8 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
Smarca1Q6PGB8 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC29.05■■■□□ 2.24
Smarca1Q6PGB8 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
Smarca1Q6PGB8 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC29.01■■■□□ 2.23
Smarca1Q6PGB8 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC29■■■□□ 2.23
Smarca1Q6PGB8 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC28.98■■■□□ 2.23
Smarca1Q6PGB8 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC28.97■■■□□ 2.23
Smarca1Q6PGB8 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
Smarca1Q6PGB8 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
Smarca1Q6PGB8 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
Smarca1Q6PGB8 Mipep-204ENSMUST00000225043 1548 ntBASIC28.95■■■□□ 2.23
Smarca1Q6PGB8 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC28.95■■■□□ 2.22
Smarca1Q6PGB8 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
Smarca1Q6PGB8 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
Smarca1Q6PGB8 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
Smarca1Q6PGB8 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC28.94■■■□□ 2.22
Smarca1Q6PGB8 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC28.93■■■□□ 2.22
Smarca1Q6PGB8 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC28.93■■■□□ 2.22
Smarca1Q6PGB8 AC153504.1-201ENSMUST00000218379 2290 ntBASIC28.92■■■□□ 2.22
Smarca1Q6PGB8 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC28.92■■■□□ 2.22
Smarca1Q6PGB8 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.21
Smarca1Q6PGB8 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC28.86■■■□□ 2.21
Smarca1Q6PGB8 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
Smarca1Q6PGB8 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
Smarca1Q6PGB8 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC28.81■■■□□ 2.2
Smarca1Q6PGB8 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC28.81■■■□□ 2.2
Smarca1Q6PGB8 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC28.8■■■□□ 2.2
Smarca1Q6PGB8 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC28.8■■■□□ 2.2
Smarca1Q6PGB8 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC28.78■■■□□ 2.2
Smarca1Q6PGB8 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
Smarca1Q6PGB8 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC28.77■■■□□ 2.2
Smarca1Q6PGB8 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
Smarca1Q6PGB8 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
Smarca1Q6PGB8 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC28.76■■■□□ 2.19
Smarca1Q6PGB8 Peli2-204ENSMUST00000226513 1320 ntBASIC28.75■■■□□ 2.19
Smarca1Q6PGB8 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
Smarca1Q6PGB8 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC28.73■■■□□ 2.19
Smarca1Q6PGB8 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC28.7■■■□□ 2.19
Smarca1Q6PGB8 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
Smarca1Q6PGB8 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC28.69■■■□□ 2.18
Smarca1Q6PGB8 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC28.68■■■□□ 2.18
Smarca1Q6PGB8 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
Smarca1Q6PGB8 Zfp131-205ENSMUST00000223812 663 ntBASIC28.67■■■□□ 2.18
Smarca1Q6PGB8 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC28.67■■■□□ 2.18
Smarca1Q6PGB8 Gm16148-201ENSMUST00000119653 893 ntBASIC28.66■■■□□ 2.18
Smarca1Q6PGB8 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
Smarca1Q6PGB8 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
Smarca1Q6PGB8 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
Smarca1Q6PGB8 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Smarca1Q6PGB8 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC28.62■■■□□ 2.17
Smarca1Q6PGB8 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Smarca1Q6PGB8 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC28.61■■■□□ 2.17
Smarca1Q6PGB8 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC28.6■■■□□ 2.17
Smarca1Q6PGB8 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC28.59■■■□□ 2.17
Smarca1Q6PGB8 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
Smarca1Q6PGB8 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
Smarca1Q6PGB8 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Smarca1Q6PGB8 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Smarca1Q6PGB8 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC28.56■■■□□ 2.16
Smarca1Q6PGB8 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
Smarca1Q6PGB8 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
Smarca1Q6PGB8 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
Smarca1Q6PGB8 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC28.54■■■□□ 2.16
Smarca1Q6PGB8 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
Smarca1Q6PGB8 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
Smarca1Q6PGB8 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
Smarca1Q6PGB8 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
Smarca1Q6PGB8 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
Smarca1Q6PGB8 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
Smarca1Q6PGB8 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC28.48■■■□□ 2.15
Smarca1Q6PGB8 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC28.45■■■□□ 2.15
Smarca1Q6PGB8 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC28.42■■■□□ 2.14
Smarca1Q6PGB8 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
Smarca1Q6PGB8 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
Smarca1Q6PGB8 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Smarca1Q6PGB8 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
Smarca1Q6PGB8 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC28.39■■■□□ 2.14
Smarca1Q6PGB8 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Smarca1Q6PGB8 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
Smarca1Q6PGB8 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC28.36■■■□□ 2.13
Smarca1Q6PGB8 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC28.36■■■□□ 2.13
Smarca1Q6PGB8 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC28.36■■■□□ 2.13
Smarca1Q6PGB8 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Retrieved 100 of 76,532 protein–RNA pairs in 9.1 ms