Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC30.78■■■□□ 2.52
Limch1Q3UH68 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
Limch1Q3UH68 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC30.78■■■□□ 2.52
Limch1Q3UH68 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
Limch1Q3UH68 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
Limch1Q3UH68 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC30.76■■■□□ 2.51
Limch1Q3UH68 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
Limch1Q3UH68 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC30.74■■■□□ 2.51
Limch1Q3UH68 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
Limch1Q3UH68 Mipep-204ENSMUST00000225043 1548 ntBASIC30.73■■■□□ 2.51
Limch1Q3UH68 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
Limch1Q3UH68 Gm6658-202ENSMUST00000209493 1885 ntBASIC30.7■■■□□ 2.51
Limch1Q3UH68 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Limch1Q3UH68 AC166822.3-201ENSMUST00000227394 661 ntBASIC30.67■■■□□ 2.5
Limch1Q3UH68 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Limch1Q3UH68 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
Limch1Q3UH68 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
Limch1Q3UH68 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Limch1Q3UH68 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
Limch1Q3UH68 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
Limch1Q3UH68 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Limch1Q3UH68 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC30.62■■■□□ 2.49
Limch1Q3UH68 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
Limch1Q3UH68 Zfp131-205ENSMUST00000223812 663 ntBASIC30.6■■■□□ 2.49
Limch1Q3UH68 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC30.56■■■□□ 2.48
Limch1Q3UH68 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC30.56■■■□□ 2.48
Limch1Q3UH68 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC30.54■■■□□ 2.48
Limch1Q3UH68 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.47
Limch1Q3UH68 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
Limch1Q3UH68 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC30.47■■■□□ 2.47
Limch1Q3UH68 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Limch1Q3UH68 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
Limch1Q3UH68 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC30.44■■■□□ 2.46
Limch1Q3UH68 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC30.41■■■□□ 2.46
Limch1Q3UH68 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC30.4■■■□□ 2.46
Limch1Q3UH68 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
Limch1Q3UH68 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC30.35■■■□□ 2.45
Limch1Q3UH68 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
Limch1Q3UH68 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Limch1Q3UH68 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
Limch1Q3UH68 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
Limch1Q3UH68 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Limch1Q3UH68 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
Limch1Q3UH68 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC30.28■■■□□ 2.44
Limch1Q3UH68 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
Limch1Q3UH68 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
Limch1Q3UH68 AC153504.1-201ENSMUST00000218379 2290 ntBASIC30.26■■■□□ 2.43
Limch1Q3UH68 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Limch1Q3UH68 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC30.24■■■□□ 2.43
Limch1Q3UH68 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC30.23■■■□□ 2.43
Limch1Q3UH68 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
Limch1Q3UH68 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
Limch1Q3UH68 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Limch1Q3UH68 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC30.21■■■□□ 2.43
Limch1Q3UH68 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
Limch1Q3UH68 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC30.19■■■□□ 2.42
Limch1Q3UH68 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
Limch1Q3UH68 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
Limch1Q3UH68 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC30.18■■■□□ 2.42
Limch1Q3UH68 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
Limch1Q3UH68 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
Limch1Q3UH68 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC30.15■■■□□ 2.42
Limch1Q3UH68 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC30.15■■■□□ 2.42
Limch1Q3UH68 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC30.15■■■□□ 2.42
Limch1Q3UH68 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC30.15■■■□□ 2.42
Limch1Q3UH68 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Limch1Q3UH68 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC30.12■■■□□ 2.41
Limch1Q3UH68 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC30.11■■■□□ 2.41
Limch1Q3UH68 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC30.1■■■□□ 2.41
Limch1Q3UH68 Gm16148-201ENSMUST00000119653 893 ntBASIC30.09■■■□□ 2.41
Limch1Q3UH68 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
Limch1Q3UH68 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
Limch1Q3UH68 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
Limch1Q3UH68 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC30.07■■■□□ 2.4
Limch1Q3UH68 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC30.06■■■□□ 2.4
Limch1Q3UH68 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC30.06■■■□□ 2.4
Limch1Q3UH68 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
Limch1Q3UH68 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
Limch1Q3UH68 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
Limch1Q3UH68 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
Limch1Q3UH68 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
Limch1Q3UH68 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
Limch1Q3UH68 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC30.02■■■□□ 2.4
Limch1Q3UH68 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC29.99■■■□□ 2.39
Limch1Q3UH68 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
Limch1Q3UH68 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC29.96■■■□□ 2.39
Limch1Q3UH68 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
Limch1Q3UH68 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
Limch1Q3UH68 Peli2-204ENSMUST00000226513 1320 ntBASIC29.94■■■□□ 2.38
Limch1Q3UH68 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
Limch1Q3UH68 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
Limch1Q3UH68 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
Limch1Q3UH68 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
Limch1Q3UH68 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
Limch1Q3UH68 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
Limch1Q3UH68 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
Limch1Q3UH68 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC29.89■■■□□ 2.38
Limch1Q3UH68 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
Limch1Q3UH68 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC29.86■■■□□ 2.37
Limch1Q3UH68 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
Retrieved 100 of 76,532 protein–RNA pairs in 12.5 ms