Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC30.78■■■□□ 2.52
Limch1Q3UH68 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
Limch1Q3UH68 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC30.78■■■□□ 2.52
Limch1Q3UH68 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
Limch1Q3UH68 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
Limch1Q3UH68 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC30.76■■■□□ 2.51
Limch1Q3UH68 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
Limch1Q3UH68 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC30.74■■■□□ 2.51
Limch1Q3UH68 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
Limch1Q3UH68 Mipep-204ENSMUST00000225043 1548 ntBASIC30.73■■■□□ 2.51
Limch1Q3UH68 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
Limch1Q3UH68 Gm6658-202ENSMUST00000209493 1885 ntBASIC30.7■■■□□ 2.51
Limch1Q3UH68 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Limch1Q3UH68 AC166822.3-201ENSMUST00000227394 661 ntBASIC30.67■■■□□ 2.5
Limch1Q3UH68 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Limch1Q3UH68 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
Limch1Q3UH68 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
Limch1Q3UH68 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Limch1Q3UH68 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
Limch1Q3UH68 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
Limch1Q3UH68 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Limch1Q3UH68 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC30.62■■■□□ 2.49
Limch1Q3UH68 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
Limch1Q3UH68 Zfp131-205ENSMUST00000223812 663 ntBASIC30.6■■■□□ 2.49
Limch1Q3UH68 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC30.56■■■□□ 2.48
Limch1Q3UH68 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC30.56■■■□□ 2.48
Limch1Q3UH68 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC30.54■■■□□ 2.48
Limch1Q3UH68 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.47
Limch1Q3UH68 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
Limch1Q3UH68 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC30.47■■■□□ 2.47
Limch1Q3UH68 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Limch1Q3UH68 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
Limch1Q3UH68 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC30.44■■■□□ 2.46
Limch1Q3UH68 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC30.41■■■□□ 2.46
Limch1Q3UH68 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC30.4■■■□□ 2.46
Limch1Q3UH68 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
Limch1Q3UH68 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC30.35■■■□□ 2.45
Limch1Q3UH68 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
Limch1Q3UH68 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Limch1Q3UH68 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
Limch1Q3UH68 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
Limch1Q3UH68 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Limch1Q3UH68 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
Limch1Q3UH68 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC30.28■■■□□ 2.44
Limch1Q3UH68 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
Limch1Q3UH68 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
Limch1Q3UH68 AC153504.1-201ENSMUST00000218379 2290 ntBASIC30.26■■■□□ 2.43
Limch1Q3UH68 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Limch1Q3UH68 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC30.24■■■□□ 2.43
Limch1Q3UH68 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC30.23■■■□□ 2.43
Limch1Q3UH68 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
Limch1Q3UH68 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
Limch1Q3UH68 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Limch1Q3UH68 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC30.21■■■□□ 2.43
Limch1Q3UH68 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
Limch1Q3UH68 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC30.19■■■□□ 2.42
Limch1Q3UH68 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
Limch1Q3UH68 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
Limch1Q3UH68 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC30.18■■■□□ 2.42
Limch1Q3UH68 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
Limch1Q3UH68 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
Limch1Q3UH68 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC30.15■■■□□ 2.42
Limch1Q3UH68 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC30.15■■■□□ 2.42
Limch1Q3UH68 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC30.15■■■□□ 2.42
Limch1Q3UH68 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC30.15■■■□□ 2.42
Limch1Q3UH68 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Limch1Q3UH68 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC30.12■■■□□ 2.41
Limch1Q3UH68 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC30.11■■■□□ 2.41
Limch1Q3UH68 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC30.1■■■□□ 2.41
Limch1Q3UH68 Gm16148-201ENSMUST00000119653 893 ntBASIC30.09■■■□□ 2.41
Limch1Q3UH68 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
Limch1Q3UH68 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
Limch1Q3UH68 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
Limch1Q3UH68 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC30.07■■■□□ 2.4
Limch1Q3UH68 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC30.06■■■□□ 2.4
Limch1Q3UH68 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC30.06■■■□□ 2.4
Limch1Q3UH68 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
Limch1Q3UH68 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
Limch1Q3UH68 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
Limch1Q3UH68 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
Limch1Q3UH68 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
Limch1Q3UH68 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
Limch1Q3UH68 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC30.02■■■□□ 2.4
Limch1Q3UH68 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC29.99■■■□□ 2.39
Limch1Q3UH68 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
Limch1Q3UH68 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC29.96■■■□□ 2.39
Limch1Q3UH68 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
Limch1Q3UH68 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
Limch1Q3UH68 Peli2-204ENSMUST00000226513 1320 ntBASIC29.94■■■□□ 2.38
Limch1Q3UH68 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
Limch1Q3UH68 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
Limch1Q3UH68 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
Limch1Q3UH68 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
Limch1Q3UH68 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
Limch1Q3UH68 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
Limch1Q3UH68 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
Limch1Q3UH68 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC29.89■■■□□ 2.38
Limch1Q3UH68 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
Limch1Q3UH68 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC29.86■■■□□ 2.37
Limch1Q3UH68 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
Retrieved 100 of 76,532 protein–RNA pairs in 10.5 ms