Protein–RNA interactions for Protein: J3QMG8

Trav13d-3, T cell receptor alpha variable 13D-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13d-3J3QMG8 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC23,17■■□□□ 1,3
Trav13d-3J3QMG8 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC23,16■■□□□ 1,3
Trav13d-3J3QMG8 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC23,14■■□□□ 1,29
Trav13d-3J3QMG8 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC23,13■■□□□ 1,29
Trav13d-3J3QMG8 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC23,13■■□□□ 1,29
Trav13d-3J3QMG8 Gm6658-202ENSMUST00000209493 1885 ntBASIC23,13■■□□□ 1,29
Trav13d-3J3QMG8 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC23,09■■□□□ 1,29
Trav13d-3J3QMG8 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC23,09■■□□□ 1,29
Trav13d-3J3QMG8 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC23,06■■□□□ 1,28
Trav13d-3J3QMG8 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC23,05■■□□□ 1,28
Trav13d-3J3QMG8 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC23,05■■□□□ 1,28
Trav13d-3J3QMG8 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC23,03■■□□□ 1,28
Trav13d-3J3QMG8 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC23,03■■□□□ 1,28
Trav13d-3J3QMG8 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC23,01■■□□□ 1,27
Trav13d-3J3QMG8 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC23,01■■□□□ 1,27
Trav13d-3J3QMG8 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC22,99■■□□□ 1,27
Trav13d-3J3QMG8 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC22,99■■□□□ 1,27
Trav13d-3J3QMG8 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC22,99■■□□□ 1,27
Trav13d-3J3QMG8 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC22,98■■□□□ 1,27
Trav13d-3J3QMG8 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC22,96■■□□□ 1,27
Trav13d-3J3QMG8 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC22,96■■□□□ 1,27
Trav13d-3J3QMG8 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC22,95■■□□□ 1,26
Trav13d-3J3QMG8 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC22,94■■□□□ 1,26
Trav13d-3J3QMG8 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC22,9■■□□□ 1,26
Trav13d-3J3QMG8 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC22,89■■□□□ 1,25
Trav13d-3J3QMG8 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC22,89■■□□□ 1,25
Trav13d-3J3QMG8 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC22,88■■□□□ 1,25
Trav13d-3J3QMG8 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC22,86■■□□□ 1,25
Trav13d-3J3QMG8 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC22,85■■□□□ 1,25
Trav13d-3J3QMG8 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC22,85■■□□□ 1,25
Trav13d-3J3QMG8 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC22,85■■□□□ 1,25
Trav13d-3J3QMG8 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC22,85■■□□□ 1,25
Trav13d-3J3QMG8 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC22,85■■□□□ 1,25
Trav13d-3J3QMG8 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC22,84■■□□□ 1,25
Trav13d-3J3QMG8 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC22,84■■□□□ 1,25
Trav13d-3J3QMG8 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC22,84■■□□□ 1,25
Trav13d-3J3QMG8 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC22,84■■□□□ 1,25
Trav13d-3J3QMG8 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC22,83■■□□□ 1,24
Trav13d-3J3QMG8 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC22,79■■□□□ 1,24
Trav13d-3J3QMG8 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC22,79■■□□□ 1,24
Trav13d-3J3QMG8 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC22,78■■□□□ 1,24
Trav13d-3J3QMG8 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC22,78■■□□□ 1,24
Trav13d-3J3QMG8 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC22,78■■□□□ 1,24
Trav13d-3J3QMG8 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC22,77■■□□□ 1,24
Trav13d-3J3QMG8 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC22,76■■□□□ 1,23
Trav13d-3J3QMG8 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC22,76■■□□□ 1,23
Trav13d-3J3QMG8 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC22,76■■□□□ 1,23
Trav13d-3J3QMG8 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC22,75■■□□□ 1,23
Trav13d-3J3QMG8 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC22,73■■□□□ 1,23
Trav13d-3J3QMG8 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC22,71■■□□□ 1,23
Trav13d-3J3QMG8 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC22,71■■□□□ 1,23
Trav13d-3J3QMG8 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC22,71■■□□□ 1,23
Trav13d-3J3QMG8 Peli2-204ENSMUST00000226513 1320 ntBASIC22,7■■□□□ 1,22
Trav13d-3J3QMG8 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC22,7■■□□□ 1,22
Trav13d-3J3QMG8 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC22,69■■□□□ 1,22
Trav13d-3J3QMG8 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC22,69■■□□□ 1,22
Trav13d-3J3QMG8 AC153504.1-201ENSMUST00000218379 2290 ntBASIC22,68■■□□□ 1,22
Trav13d-3J3QMG8 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC22,67■■□□□ 1,22
Trav13d-3J3QMG8 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC22,67■■□□□ 1,22
Trav13d-3J3QMG8 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC22,67■■□□□ 1,22
Trav13d-3J3QMG8 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC22,66■■□□□ 1,22
Trav13d-3J3QMG8 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC22,66■■□□□ 1,22
Trav13d-3J3QMG8 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC22,65■■□□□ 1,22
Trav13d-3J3QMG8 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC22,63■■□□□ 1,21
Trav13d-3J3QMG8 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC22,63■■□□□ 1,21
Trav13d-3J3QMG8 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC22,63■■□□□ 1,21
Trav13d-3J3QMG8 Gm24804-201ENSMUST00000174982 85 ntBASIC22,62■■□□□ 1,21
Trav13d-3J3QMG8 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC22,61■■□□□ 1,21
Trav13d-3J3QMG8 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC22,61■■□□□ 1,21
Trav13d-3J3QMG8 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC22,58■■□□□ 1,21
Trav13d-3J3QMG8 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC22,58■■□□□ 1,21
Trav13d-3J3QMG8 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC22,58■■□□□ 1,2
Trav13d-3J3QMG8 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC22,58■■□□□ 1,2
Trav13d-3J3QMG8 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC22,56■■□□□ 1,2
Trav13d-3J3QMG8 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC22,56■■□□□ 1,2
Trav13d-3J3QMG8 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC22,56■■□□□ 1,2
Trav13d-3J3QMG8 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC22,55■■□□□ 1,2
Trav13d-3J3QMG8 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC22,54■■□□□ 1,2
Trav13d-3J3QMG8 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC22,53■■□□□ 1,2
Trav13d-3J3QMG8 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC22,53■■□□□ 1,2
Trav13d-3J3QMG8 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC22,53■■□□□ 1,2
Trav13d-3J3QMG8 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC22,53■■□□□ 1,2
Trav13d-3J3QMG8 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC22,53■■□□□ 1,2
Trav13d-3J3QMG8 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC22,52■■□□□ 1,2
Trav13d-3J3QMG8 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC22,52■■□□□ 1,2
Trav13d-3J3QMG8 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC22,52■■□□□ 1,2
Trav13d-3J3QMG8 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC22,51■■□□□ 1,19
Trav13d-3J3QMG8 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC22,49■■□□□ 1,19
Trav13d-3J3QMG8 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC22,48■■□□□ 1,19
Trav13d-3J3QMG8 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC22,48■■□□□ 1,19
Trav13d-3J3QMG8 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC22,48■■□□□ 1,19
Trav13d-3J3QMG8 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC22,47■■□□□ 1,19
Trav13d-3J3QMG8 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC22,46■■□□□ 1,19
Trav13d-3J3QMG8 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC22,46■■□□□ 1,19
Trav13d-3J3QMG8 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC22,46■■□□□ 1,19
Trav13d-3J3QMG8 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC22,45■■□□□ 1,18
Trav13d-3J3QMG8 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC22,45■■□□□ 1,18
Trav13d-3J3QMG8 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC22,45■■□□□ 1,18
Trav13d-3J3QMG8 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC22,45■■□□□ 1,18
Trav13d-3J3QMG8 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC22,45■■□□□ 1,18
Retrieved 100 of 76,532 protein–RNA pairs in 22,2 ms