Protein–RNA interactions for Protein: J3QMG8

Trav13d-3, T cell receptor alpha variable 13D-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13d-3J3QMG8 Gm25239-201ENSMUST00000174915 86 ntBASIC32.38■■■□□ 2.77
Trav13d-3J3QMG8 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
Trav13d-3J3QMG8 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
Trav13d-3J3QMG8 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
Trav13d-3J3QMG8 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
Trav13d-3J3QMG8 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC29.23■■■□□ 2.27
Trav13d-3J3QMG8 Gm15042-201ENSMUST00000120212 883 ntBASIC28.73■■■□□ 2.19
Trav13d-3J3QMG8 Gm15045-201ENSMUST00000117359 883 ntBASIC28.19■■■□□ 2.1
Trav13d-3J3QMG8 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
Trav13d-3J3QMG8 Psd-208ENSMUST00000224556 2034 ntBASIC28.1■■■□□ 2.09
Trav13d-3J3QMG8 Gm24109-201ENSMUST00000175489 103 ntBASIC27.87■■■□□ 2.05
Trav13d-3J3QMG8 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
Trav13d-3J3QMG8 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC27.66■■■□□ 2.02
Trav13d-3J3QMG8 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC27.62■■■□□ 2.01
Trav13d-3J3QMG8 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
Trav13d-3J3QMG8 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC27.29■■□□□ 1.96
Trav13d-3J3QMG8 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
Trav13d-3J3QMG8 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Trav13d-3J3QMG8 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Trav13d-3J3QMG8 Gm23366-201ENSMUST00000175022 89 ntBASIC27.09■■□□□ 1.93
Trav13d-3J3QMG8 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC27.07■■□□□ 1.92
Trav13d-3J3QMG8 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Trav13d-3J3QMG8 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC27.04■■□□□ 1.92
Trav13d-3J3QMG8 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
Trav13d-3J3QMG8 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC26.97■■□□□ 1.91
Trav13d-3J3QMG8 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Trav13d-3J3QMG8 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Trav13d-3J3QMG8 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC26.89■■□□□ 1.9
Trav13d-3J3QMG8 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Trav13d-3J3QMG8 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Trav13d-3J3QMG8 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Trav13d-3J3QMG8 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
Trav13d-3J3QMG8 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC26.6■■□□□ 1.85
Trav13d-3J3QMG8 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
Trav13d-3J3QMG8 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Trav13d-3J3QMG8 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC26.44■■□□□ 1.82
Trav13d-3J3QMG8 AC153911.1-202ENSMUST00000218534 1034 ntBASIC26.39■■□□□ 1.82
Trav13d-3J3QMG8 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Trav13d-3J3QMG8 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
Trav13d-3J3QMG8 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Trav13d-3J3QMG8 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC26.11■■□□□ 1.77
Trav13d-3J3QMG8 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
Trav13d-3J3QMG8 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC25.88■■□□□ 1.73
Trav13d-3J3QMG8 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Trav13d-3J3QMG8 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
Trav13d-3J3QMG8 Gm10524-201ENSMUST00000181931 1893 ntBASIC25.84■■□□□ 1.73
Trav13d-3J3QMG8 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Trav13d-3J3QMG8 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Trav13d-3J3QMG8 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC25.74■■□□□ 1.71
Trav13d-3J3QMG8 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Trav13d-3J3QMG8 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC25.59■■□□□ 1.69
Trav13d-3J3QMG8 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Trav13d-3J3QMG8 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Trav13d-3J3QMG8 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
Trav13d-3J3QMG8 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Trav13d-3J3QMG8 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Trav13d-3J3QMG8 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC25.44■■□□□ 1.66
Trav13d-3J3QMG8 Gm25238-201ENSMUST00000174914 89 ntBASIC25.42■■□□□ 1.66
Trav13d-3J3QMG8 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Trav13d-3J3QMG8 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
Trav13d-3J3QMG8 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Trav13d-3J3QMG8 CT025624.2-201ENSMUST00000223609 1909 ntBASIC25.33■■□□□ 1.65
Trav13d-3J3QMG8 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC25.31■■□□□ 1.64
Trav13d-3J3QMG8 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC25.3■■□□□ 1.64
Trav13d-3J3QMG8 Gm27325-201ENSMUST00000175467 74 ntBASIC25.27■■□□□ 1.64
Trav13d-3J3QMG8 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC25.26■■□□□ 1.63
Trav13d-3J3QMG8 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC25.25■■□□□ 1.63
Trav13d-3J3QMG8 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC25.25■■□□□ 1.63
Trav13d-3J3QMG8 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Trav13d-3J3QMG8 Gm42596-201ENSMUST00000196305 1958 ntBASIC25.24■■□□□ 1.63
Trav13d-3J3QMG8 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC25.22■■□□□ 1.63
Trav13d-3J3QMG8 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC25.1■■□□□ 1.61
Trav13d-3J3QMG8 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC25.07■■□□□ 1.6
Trav13d-3J3QMG8 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Trav13d-3J3QMG8 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Trav13d-3J3QMG8 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Trav13d-3J3QMG8 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Trav13d-3J3QMG8 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC24.92■■□□□ 1.58
Trav13d-3J3QMG8 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Trav13d-3J3QMG8 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Trav13d-3J3QMG8 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
Trav13d-3J3QMG8 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
Trav13d-3J3QMG8 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Trav13d-3J3QMG8 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Trav13d-3J3QMG8 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Trav13d-3J3QMG8 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC24.73■■□□□ 1.55
Trav13d-3J3QMG8 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Trav13d-3J3QMG8 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC24.73■■□□□ 1.55
Trav13d-3J3QMG8 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC24.72■■□□□ 1.55
Trav13d-3J3QMG8 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
Trav13d-3J3QMG8 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC24.69■■□□□ 1.54
Trav13d-3J3QMG8 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Trav13d-3J3QMG8 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
Trav13d-3J3QMG8 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
Trav13d-3J3QMG8 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Trav13d-3J3QMG8 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Trav13d-3J3QMG8 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Trav13d-3J3QMG8 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC24.54■■□□□ 1.52
Trav13d-3J3QMG8 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC24.51■■□□□ 1.51
Trav13d-3J3QMG8 Rab21-202ENSMUST00000218831 843 ntBASIC24.5■■□□□ 1.51
Retrieved 100 of 76,532 protein–RNA pairs in 15.4 ms