Protein–RNA interactions for Protein: A0A0B4J1P1

Trbv30, T cell receptor beta, variable 30 (Fragment), mousemouse

Predictions only

Length 111 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv30A0A0B4J1P1 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trbv30A0A0B4J1P1 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trbv30A0A0B4J1P1 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Trbv30A0A0B4J1P1 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trbv30A0A0B4J1P1 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC19.58■□□□□ 0.72
Trbv30A0A0B4J1P1 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC19.57■□□□□ 0.72
Trbv30A0A0B4J1P1 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Trbv30A0A0B4J1P1 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trbv30A0A0B4J1P1 Gm24804-201ENSMUST00000174982 85 ntBASIC19.53■□□□□ 0.72
Trbv30A0A0B4J1P1 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Trbv30A0A0B4J1P1 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Trbv30A0A0B4J1P1 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Trbv30A0A0B4J1P1 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Trbv30A0A0B4J1P1 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Trbv30A0A0B4J1P1 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trbv30A0A0B4J1P1 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Trbv30A0A0B4J1P1 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Trbv30A0A0B4J1P1 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trbv30A0A0B4J1P1 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC19.49■□□□□ 0.71
Trbv30A0A0B4J1P1 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Trbv30A0A0B4J1P1 Gm2415-204ENSMUST00000190235 2004 ntBASIC19.46■□□□□ 0.71
Trbv30A0A0B4J1P1 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Trbv30A0A0B4J1P1 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trbv30A0A0B4J1P1 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC19.43■□□□□ 0.7
Trbv30A0A0B4J1P1 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trbv30A0A0B4J1P1 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trbv30A0A0B4J1P1 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trbv30A0A0B4J1P1 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trbv30A0A0B4J1P1 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trbv30A0A0B4J1P1 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trbv30A0A0B4J1P1 Peli2-204ENSMUST00000226513 1320 ntBASIC19.4■□□□□ 0.7
Trbv30A0A0B4J1P1 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trbv30A0A0B4J1P1 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
Trbv30A0A0B4J1P1 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trbv30A0A0B4J1P1 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trbv30A0A0B4J1P1 Gm6658-202ENSMUST00000209493 1885 ntBASIC19.36■□□□□ 0.69
Trbv30A0A0B4J1P1 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trbv30A0A0B4J1P1 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Trbv30A0A0B4J1P1 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Trbv30A0A0B4J1P1 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trbv30A0A0B4J1P1 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Trbv30A0A0B4J1P1 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trbv30A0A0B4J1P1 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trbv30A0A0B4J1P1 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Trbv30A0A0B4J1P1 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Trbv30A0A0B4J1P1 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC19.31■□□□□ 0.68
Trbv30A0A0B4J1P1 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trbv30A0A0B4J1P1 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trbv30A0A0B4J1P1 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC19.3■□□□□ 0.68
Trbv30A0A0B4J1P1 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trbv30A0A0B4J1P1 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trbv30A0A0B4J1P1 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Trbv30A0A0B4J1P1 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trbv30A0A0B4J1P1 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC19.25■□□□□ 0.67
Trbv30A0A0B4J1P1 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trbv30A0A0B4J1P1 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC19.23■□□□□ 0.67
Trbv30A0A0B4J1P1 Gm16148-201ENSMUST00000119653 893 ntBASIC19.23■□□□□ 0.67
Trbv30A0A0B4J1P1 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trbv30A0A0B4J1P1 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Trbv30A0A0B4J1P1 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trbv30A0A0B4J1P1 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.66
Trbv30A0A0B4J1P1 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trbv30A0A0B4J1P1 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trbv30A0A0B4J1P1 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trbv30A0A0B4J1P1 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trbv30A0A0B4J1P1 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trbv30A0A0B4J1P1 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Trbv30A0A0B4J1P1 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trbv30A0A0B4J1P1 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Trbv30A0A0B4J1P1 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Trbv30A0A0B4J1P1 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trbv30A0A0B4J1P1 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.66
Trbv30A0A0B4J1P1 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
Trbv30A0A0B4J1P1 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC19.13■□□□□ 0.65
Trbv30A0A0B4J1P1 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trbv30A0A0B4J1P1 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Trbv30A0A0B4J1P1 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trbv30A0A0B4J1P1 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trbv30A0A0B4J1P1 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC19.12■□□□□ 0.65
Trbv30A0A0B4J1P1 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Trbv30A0A0B4J1P1 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Trbv30A0A0B4J1P1 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trbv30A0A0B4J1P1 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC19.09■□□□□ 0.65
Trbv30A0A0B4J1P1 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trbv30A0A0B4J1P1 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Trbv30A0A0B4J1P1 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC19.09■□□□□ 0.65
Trbv30A0A0B4J1P1 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trbv30A0A0B4J1P1 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trbv30A0A0B4J1P1 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Trbv30A0A0B4J1P1 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trbv30A0A0B4J1P1 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC19.05■□□□□ 0.64
Trbv30A0A0B4J1P1 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trbv30A0A0B4J1P1 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trbv30A0A0B4J1P1 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trbv30A0A0B4J1P1 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trbv30A0A0B4J1P1 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trbv30A0A0B4J1P1 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC19.03■□□□□ 0.64
Trbv30A0A0B4J1P1 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trbv30A0A0B4J1P1 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trbv30A0A0B4J1P1 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 16.1 ms