Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
LRFN1Q9P244 OR2C3-204ENST00000641802 8509 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
LRFN1Q9P244 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
LRFN1Q9P244 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
LRFN1Q9P244 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LRFN1Q9P244 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
LRFN1Q9P244 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LRFN1Q9P244 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
LRFN1Q9P244 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LRFN1Q9P244 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LRFN1Q9P244 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LRFN1Q9P244 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC12.85□□□□□ -0.35
LRFN1Q9P244 AC079781.5-202ENST00000641784 3743 ntBASIC12.85□□□□□ -0.35
LRFN1Q9P244 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC12.85□□□□□ -0.35
LRFN1Q9P244 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LRFN1Q9P244 AC005912.2-201ENST00000619492 2400 ntBASIC12.84□□□□□ -0.35
LRFN1Q9P244 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC12.84□□□□□ -0.35
LRFN1Q9P244 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC12.84□□□□□ -0.35
LRFN1Q9P244 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
LRFN1Q9P244 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC12.84□□□□□ -0.35
LRFN1Q9P244 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
LRFN1Q9P244 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
LRFN1Q9P244 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC12.84□□□□□ -0.35
LRFN1Q9P244 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC12.84□□□□□ -0.35
LRFN1Q9P244 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LRFN1Q9P244 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
LRFN1Q9P244 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LRFN1Q9P244 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LRFN1Q9P244 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LRFN1Q9P244 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LRFN1Q9P244 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC12.84□□□□□ -0.35
LRFN1Q9P244 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC12.84□□□□□ -0.35
LRFN1Q9P244 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC12.84□□□□□ -0.35
LRFN1Q9P244 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC12.84□□□□□ -0.35
LRFN1Q9P244 RPL35P9-201ENST00000446059 350 ntBASIC12.84□□□□□ -0.35
LRFN1Q9P244 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC12.84□□□□□ -0.35
LRFN1Q9P244 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC12.84□□□□□ -0.35
LRFN1Q9P244 RN7SL23P-201ENST00000484055 275 ntBASIC12.84□□□□□ -0.35
LRFN1Q9P244 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LRFN1Q9P244 RN7SKP155-201ENST00000516031 288 ntBASIC12.84□□□□□ -0.35
LRFN1Q9P244 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC12.84□□□□□ -0.35
LRFN1Q9P244 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LRFN1Q9P244 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC12.84□□□□□ -0.35
LRFN1Q9P244 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
LRFN1Q9P244 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC12.84□□□□□ -0.35
LRFN1Q9P244 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC12.84□□□□□ -0.35
LRFN1Q9P244 AC091769.1-201ENST00000619576 568 ntBASIC12.84□□□□□ -0.35
LRFN1Q9P244 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC12.84□□□□□ -0.35
LRFN1Q9P244 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC12.84□□□□□ -0.35
LRFN1Q9P244 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
LRFN1Q9P244 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LRFN1Q9P244 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
LRFN1Q9P244 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
LRFN1Q9P244 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LRFN1Q9P244 AC005840.4-201ENST00000541242 2494 ntBASIC12.84□□□□□ -0.35
LRFN1Q9P244 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LRFN1Q9P244 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LRFN1Q9P244 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LRFN1Q9P244 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
LRFN1Q9P244 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LRFN1Q9P244 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC12.84□□□□□ -0.35
LRFN1Q9P244 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LRFN1Q9P244 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
LRFN1Q9P244 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
LRFN1Q9P244 ZNF275-201ENST00000370249 5920 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LRFN1Q9P244 USP39-207ENST00000450066 2086 ntTSL 2 BASIC12.84□□□□□ -0.35
LRFN1Q9P244 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LRFN1Q9P244 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
LRFN1Q9P244 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC12.84□□□□□ -0.35
LRFN1Q9P244 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
LRFN1Q9P244 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
LRFN1Q9P244 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC12.83□□□□□ -0.35
LRFN1Q9P244 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
LRFN1Q9P244 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.35
LRFN1Q9P244 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC12.83□□□□□ -0.35
LRFN1Q9P244 KPNA4-201ENST00000334256 8981 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
LRFN1Q9P244 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.35
LRFN1Q9P244 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC12.83□□□□□ -0.35
LRFN1Q9P244 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
LRFN1Q9P244 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
LRFN1Q9P244 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC12.83□□□□□ -0.36
LRFN1Q9P244 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
LRFN1Q9P244 EML5-207ENST00000554922 9570 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
LRFN1Q9P244 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
LRFN1Q9P244 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
LRFN1Q9P244 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
LRFN1Q9P244 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
LRFN1Q9P244 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
LRFN1Q9P244 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
LRFN1Q9P244 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
LRFN1Q9P244 POU2F2-202ENST00000389341 6901 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
LRFN1Q9P244 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LRFN1Q9P244 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
LRFN1Q9P244 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LRFN1Q9P244 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
LRFN1Q9P244 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
LRFN1Q9P244 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
LRFN1Q9P244 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LRFN1Q9P244 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LRFN1Q9P244 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms