Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 AC106818.1-201ENST00000623223 3242 ntBASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
AMBRA1Q9C0C7 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 MAD1L1-201ENST00000265854 2718 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 ZNF419-202ENST00000347466 3654 ntAPPRIS P3 TSL 2 BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 ZNF239-205ENST00000535642 1904 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 CD74-212ENST00000524315 584 ntTSL 5 BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 AC003686.1-201ENST00000550956 1034 ntBASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 LAMTOR5-AS1-209ENST00000597455 805 ntBASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 TTC39B-201ENST00000297615 3053 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 ZNF595-205ENST00000610261 2911 ntAPPRIS P4 TSL 1 (best) BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 ZCCHC18-206ENST00000611638 2941 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 SUPV3L1-201ENST00000359655 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 PDE4A-204ENST00000440014 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 SYK-203ENST00000375751 4936 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
AMBRA1Q9C0C7 RC3H2-201ENST00000335387 3081 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 CYP4F23P-201ENST00000593402 1579 ntBASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 AC015921.1-201ENST00000574885 2546 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 PSD-202ENST00000406432 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 SCAF4-201ENST00000286835 4193 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 SNCAIP-222ENST00000542191 2729 ntTSL 5 BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 SPAG5-AS1-201ENST00000414744 2143 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 PFN1P12-201ENST00000455938 534 ntBASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 FAM86HP-204ENST00000513466 959 ntBASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 AC140658.4-201ENST00000561990 352 ntBASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 ATP2C2-AS1-201ENST00000565700 2998 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 RN7SL560P-201ENST00000577943 264 ntBASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 AC009542.2-202ENST00000619004 1067 ntBASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 MIR6869-201ENST00000619434 62 ntBASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 FAM120B-205ENST00000630384 3721 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 MIEF2-201ENST00000323019 3364 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
AMBRA1Q9C0C7 ZIK1-201ENST00000307468 2510 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms