Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 VAMP4-201ENST00000236192 5159 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
TPM1P09493 CHD4-211ENST00000544484 6554 ntTSL 2 BASIC15.48■□□□□ 0.07
TPM1P09493 IFT88-202ENST00000351808 2856 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TPM1P09493 ACADM-201ENST00000370834 2172 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TPM1P09493 AC026271.4-201ENST00000578214 1833 ntBASIC15.48■□□□□ 0.07
TPM1P09493 BCAS4-202ENST00000371608 6680 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
TPM1P09493 CDH8-201ENST00000299345 3728 ntTSL 5 BASIC15.48■□□□□ 0.07
TPM1P09493 RIMS1-218ENST00000522291 3876 ntTSL 5 BASIC15.48■□□□□ 0.07
TPM1P09493 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC15.48■□□□□ 0.07
TPM1P09493 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TPM1P09493 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC15.48■□□□□ 0.07
TPM1P09493 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TPM1P09493 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TPM1P09493 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TPM1P09493 ALPP-201ENST00000392027 2971 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TPM1P09493 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
TPM1P09493 AP006294.1-201ENST00000415407 339 ntBASIC15.48■□□□□ 0.07
TPM1P09493 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC15.48■□□□□ 0.07
TPM1P09493 AL157407.1-201ENST00000435784 904 ntBASIC15.48■□□□□ 0.07
TPM1P09493 AL645933.1-201ENST00000440087 609 ntBASIC15.48■□□□□ 0.07
TPM1P09493 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC15.48■□□□□ 0.07
TPM1P09493 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC15.48■□□□□ 0.07
TPM1P09493 CYMP-203ENST00000474680 1263 ntBASIC15.48■□□□□ 0.07
TPM1P09493 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC15.48■□□□□ 0.07
TPM1P09493 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC15.48■□□□□ 0.07
TPM1P09493 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC15.48■□□□□ 0.07
TPM1P09493 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC15.48■□□□□ 0.07
TPM1P09493 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC15.48■□□□□ 0.07
TPM1P09493 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC15.48■□□□□ 0.07
TPM1P09493 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
TPM1P09493 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC15.48■□□□□ 0.07
TPM1P09493 TUBGCP4-201ENST00000260383 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TPM1P09493 CAMKK2-205ENST00000392474 4453 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
TPM1P09493 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TPM1P09493 KPNA4-201ENST00000334256 8981 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TPM1P09493 SETD4-207ENST00000399215 4272 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
TPM1P09493 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TPM1P09493 ARHGAP33-204ENST00000378944 4219 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
TPM1P09493 SDC3-201ENST00000336798 6392 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TPM1P09493 AC106818.1-201ENST00000623223 3242 ntBASIC15.48■□□□□ 0.07
TPM1P09493 BDH1-203ENST00000392379 3546 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
TPM1P09493 ABCB7-203ENST00000373394 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TPM1P09493 RTL10-201ENST00000328554 6619 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
TPM1P09493 IFT81-202ENST00000361948 3048 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TPM1P09493 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC15.48■□□□□ 0.07
TPM1P09493 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC15.48■□□□□ 0.07
TPM1P09493 NUP58-206ENST00000463407 6360 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TPM1P09493 ICE1-201ENST00000296564 7927 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
TPM1P09493 FLNA-204ENST00000369856 8241 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
TPM1P09493 DOT1L-201ENST00000398665 7436 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TPM1P09493 KCNIP1-208ENST00000520740 1845 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
TPM1P09493 AC020917.4-201ENST00000623994 1999 ntBASIC15.47■□□□□ 0.07
TPM1P09493 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC15.47■□□□□ 0.07
TPM1P09493 BCL2L11-217ENST00000610735 5120 ntTSL 5 BASIC15.47■□□□□ 0.07
TPM1P09493 MARK2-205ENST00000408948 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
TPM1P09493 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
TPM1P09493 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC15.47■□□□□ 0.07
TPM1P09493 BSDC1-201ENST00000341071 4599 ntTSL 2 BASIC15.47■□□□□ 0.07
TPM1P09493 SH3BP2-203ENST00000442312 9211 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
TPM1P09493 NOS3-201ENST00000297494 4388 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TPM1P09493 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TPM1P09493 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
TPM1P09493 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
TPM1P09493 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
TPM1P09493 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TPM1P09493 DGCR5-201ENST00000399539 862 ntBASIC15.47■□□□□ 0.07
TPM1P09493 GOLGA6L11P-201ENST00000417252 1298 ntBASIC15.47■□□□□ 0.07
TPM1P09493 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
TPM1P09493 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC15.47■□□□□ 0.07
TPM1P09493 AC016694.1-201ENST00000434179 700 ntBASIC15.47■□□□□ 0.07
TPM1P09493 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC15.47■□□□□ 0.07
TPM1P09493 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
TPM1P09493 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC15.47■□□□□ 0.07
TPM1P09493 AC022217.1-201ENST00000521069 738 ntBASIC15.47■□□□□ 0.07
TPM1P09493 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC15.47■□□□□ 0.07
TPM1P09493 TRPM5-202ENST00000528453 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
TPM1P09493 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC15.47■□□□□ 0.07
TPM1P09493 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC15.47■□□□□ 0.07
TPM1P09493 AC190387.1-201ENST00000551683 408 ntBASIC15.47■□□□□ 0.07
TPM1P09493 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
TPM1P09493 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC15.47■□□□□ 0.07
TPM1P09493 DUX4L46-201ENST00000566845 751 ntBASIC15.47■□□□□ 0.07
TPM1P09493 PPY2P-201ENST00000582808 702 ntBASIC15.47■□□□□ 0.07
TPM1P09493 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
TPM1P09493 INO80C-206ENST00000586489 594 ntTSL 3 BASIC15.47■□□□□ 0.07
TPM1P09493 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC15.47■□□□□ 0.07
TPM1P09493 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC15.47■□□□□ 0.07
TPM1P09493 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC15.47■□□□□ 0.07
TPM1P09493 AL022328.1-201ENST00000610050 478 ntBASIC15.47■□□□□ 0.07
TPM1P09493 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC15.47■□□□□ 0.07
TPM1P09493 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
TPM1P09493 AGGF1P10-201ENST00000635005 2191 ntBASIC15.47■□□□□ 0.07
TPM1P09493 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TPM1P09493 SIGLEC12-201ENST00000291707 2121 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TPM1P09493 TBR1-201ENST00000389554 4009 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TPM1P09493 FGGY-201ENST00000303721 1976 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TPM1P09493 IFT172-203ENST00000416524 1982 ntTSL 2 BASIC15.47■□□□□ 0.07
TPM1P09493 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC15.47■□□□□ 0.07
TPM1P09493 ITGAX-201ENST00000268296 4703 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
TPM1P09493 FAM187A-201ENST00000331733 3397 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 268.9 ms