Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0.01
LRCH3Q96II8 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
LRCH3Q96II8 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
LRCH3Q96II8 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC15.08■□□□□ 0.01
LRCH3Q96II8 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC15.08■□□□□ 0.01
LRCH3Q96II8 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
LRCH3Q96II8 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
LRCH3Q96II8 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
LRCH3Q96II8 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
LRCH3Q96II8 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
LRCH3Q96II8 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
LRCH3Q96II8 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0
LRCH3Q96II8 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LRCH3Q96II8 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
LRCH3Q96II8 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
LRCH3Q96II8 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LRCH3Q96II8 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LRCH3Q96II8 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC15.08■□□□□ 0
LRCH3Q96II8 ZWINT-202ENST00000361148 807 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
LRCH3Q96II8 CPSF4L-202ENST00000397671 1275 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
LRCH3Q96II8 RPL3P2-204ENST00000413027 1203 ntBASIC15.08■□□□□ 0
LRCH3Q96II8 AL158207.2-201ENST00000414926 266 ntTSL 5 BASIC15.08■□□□□ 0
LRCH3Q96II8 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC15.08■□□□□ 0
LRCH3Q96II8 AL590399.1-204ENST00000430302 781 ntTSL 5 BASIC15.08■□□□□ 0
LRCH3Q96II8 PLA2G6-210ENST00000435484 612 ntTSL 4 BASIC15.08■□□□□ 0
LRCH3Q96II8 AC006059.1-201ENST00000438017 722 ntTSL 5 BASIC15.08■□□□□ 0
LRCH3Q96II8 MGAT4D-201ENST00000503109 1281 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
LRCH3Q96II8 AC104117.4-201ENST00000521486 847 ntBASIC15.08■□□□□ 0
LRCH3Q96II8 AC026616.1-201ENST00000523157 525 ntBASIC15.08■□□□□ 0
LRCH3Q96II8 DDIAS-204ENST00000525388 961 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
LRCH3Q96II8 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC15.08■□□□□ 0
LRCH3Q96II8 PPY-202ENST00000587006 431 ntTSL 3 BASIC15.08■□□□□ 0
LRCH3Q96II8 MIR6819-201ENST00000622122 61 ntBASIC15.08■□□□□ 0
LRCH3Q96II8 LINC02498-201ENST00000635390 1065 ntTSL 5 BASIC15.08■□□□□ 0
LRCH3Q96II8 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LRCH3Q96II8 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC15.08■□□□□ 0
LRCH3Q96II8 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
LRCH3Q96II8 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
LRCH3Q96II8 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC15.08■□□□□ 0
LRCH3Q96II8 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0
LRCH3Q96II8 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC15.08■□□□□ 0
LRCH3Q96II8 FAM83A-AS1-202ENST00000520576 1347 ntTSL 1 (best) BASIC15.08■□□□□ 0
LRCH3Q96II8 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.08■□□□□ 0
LRCH3Q96II8 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
LRCH3Q96II8 TPPP3-205ENST00000564104 1736 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LRCH3Q96II8 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
LRCH3Q96II8 ELP4-223ENST00000640342 1392 ntTSL 5 BASIC15.08■□□□□ 0
LRCH3Q96II8 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LRCH3Q96II8 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.08■□□□□ 0
LRCH3Q96II8 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
LRCH3Q96II8 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
LRCH3Q96II8 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LRCH3Q96II8 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
LRCH3Q96II8 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LRCH3Q96II8 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LRCH3Q96II8 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC15.08■□□□□ 0
LRCH3Q96II8 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
LRCH3Q96II8 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LRCH3Q96II8 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.07■□□□□ 0
LRCH3Q96II8 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LRCH3Q96II8 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC15.07■□□□□ 0
LRCH3Q96II8 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC15.07■□□□□ 0
LRCH3Q96II8 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LRCH3Q96II8 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LRCH3Q96II8 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
LRCH3Q96II8 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LRCH3Q96II8 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
LRCH3Q96II8 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC15.07■□□□□ 0
LRCH3Q96II8 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
LRCH3Q96II8 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC15.07■□□□□ 0
LRCH3Q96II8 SSR4-202ENST00000370085 526 ntTSL 2 BASIC15.07■□□□□ 0
LRCH3Q96II8 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC15.07■□□□□ 0
LRCH3Q96II8 DNM1P46-202ENST00000415963 882 ntBASIC15.07■□□□□ 0
LRCH3Q96II8 AC000077.1-201ENST00000420012 953 ntBASIC15.07■□□□□ 0
LRCH3Q96II8 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC15.07■□□□□ 0
LRCH3Q96II8 CCND3P1-201ENST00000438347 580 ntBASIC15.07■□□□□ 0
LRCH3Q96II8 AC131235.2-201ENST00000445553 1057 ntBASIC15.07■□□□□ 0
LRCH3Q96II8 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC15.07■□□□□ 0
LRCH3Q96II8 ALDOAP1-201ENST00000491506 1078 ntBASIC15.07■□□□□ 0
LRCH3Q96II8 NPM1P28-201ENST00000492269 840 ntBASIC15.07■□□□□ 0
LRCH3Q96II8 CAP2-207ENST00000493172 861 ntTSL 2 BASIC15.07■□□□□ 0
LRCH3Q96II8 AC093700.1-201ENST00000503348 717 ntBASIC15.07■□□□□ 0
LRCH3Q96II8 AC137579.2-201ENST00000517714 551 ntTSL 4 BASIC15.07■□□□□ 0
LRCH3Q96II8 AC087272.1-201ENST00000523624 533 ntBASIC15.07■□□□□ 0
LRCH3Q96II8 AC090971.1-201ENST00000559302 510 ntTSL 2 BASIC15.07■□□□□ 0
LRCH3Q96II8 AL031710.1-201ENST00000570022 468 ntTSL 2 BASIC15.07■□□□□ 0
LRCH3Q96II8 PCTP-206ENST00000573500 919 ntTSL 3 BASIC15.07■□□□□ 0
LRCH3Q96II8 CSNK1A1-209ENST00000606299 1075 ntTSL 3 BASIC15.07■□□□□ 0
LRCH3Q96II8 Metazoa_SRP.173-201ENST00000614020 273 ntBASIC15.07■□□□□ 0
LRCH3Q96II8 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LRCH3Q96II8 CICP4-201ENST00000447359 2812 ntBASIC15.07■□□□□ 0
LRCH3Q96II8 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LRCH3Q96II8 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC15.07■□□□□ 0
LRCH3Q96II8 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LRCH3Q96II8 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC15.07■□□□□ 0
LRCH3Q96II8 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LRCH3Q96II8 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LRCH3Q96II8 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC15.07■□□□□ 0
LRCH3Q96II8 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LRCH3Q96II8 AC006504.5-208ENST00000588784 2401 ntBASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms