Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MRPL51-205ENST00000543164 814 ntTSL 2 BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 MRPL51-206ENST00000543703 441 ntTSL 3 BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 SNRPF-205ENST00000553192 552 ntTSL 4 BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 AC015818.3-201ENST00000583797 589 ntBASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 AC091132.6-201ENST00000586411 826 ntTSL 5 BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 PRMT5-202ENST00000324366 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 FAHD2A-204ENST00000447036 1366 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 PDHB-210ENST00000485460 1397 ntTSL 2 BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 LINC01658-201ENST00000320372 1578 ntTSL 2 BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 ARR3-201ENST00000307959 1292 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 TAC4-203ENST00000352793 564 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 SLC35A2-203ENST00000376515 1044 ntTSL 3 BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 ELFN1-AS1-201ENST00000415399 636 ntTSL 5 BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 SDCBP2P1-201ENST00000416115 614 ntBASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 SMIM14-205ENST00000511809 830 ntTSL 2 BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 PTPN20-229ENST00000513756 640 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 AC090617.4-201ENST00000572404 422 ntTSL 3 BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 NRSN2-206ENST00000608736 712 ntTSL 3 BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 UBE2V1-222ENST00000557021 2258 ntTSL 5 BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 OXGR1-204ENST00000543457 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 GRIA3-208ENST00000620581 2991 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 RXRG-201ENST00000359842 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 ZNF684-201ENST00000372696 1009 ntTSL 3 BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 RN7SL677P-201ENST00000466970 319 ntBASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 STAU2-212ENST00000521419 972 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 DDX11L8-201ENST00000535849 366 ntBASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 RN7SL202P-201ENST00000584410 262 ntBASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 AC009812.1-201ENST00000605948 1059 ntBASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 Metazoa_SRP.122-201ENST00000610476 285 ntBASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 BX510359.7-201ENST00000619819 630 ntBASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 KRT8P24-201ENST00000560290 1559 ntBASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 CREB5-202ENST00000396298 2001 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC88AQ3V6T2 LINC02486-201ENST00000604157 3000 ntBASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 ARCN1-204ENST00000534182 1669 ntTSL 5 BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 AC002350.2-201ENST00000623894 1828 ntBASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 IGHV3-11-201ENST00000390601 473 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 TISP43-202ENST00000409982 1039 ntAPPRIS P5 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC88AQ3V6T2 AC246787.2-202ENST00000418566 370 ntTSL 3 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms