Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 LINC01996-201ENST00000573270 1273 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
RHBDL3P58872 RN7SL605P-201ENST00000577229 281 ntBASIC16.23■□□□□ 0.19
RHBDL3P58872 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
RHBDL3P58872 GGNBP1-204ENST00000613113 887 ntBASIC16.23■□□□□ 0.19
RHBDL3P58872 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC16.23■□□□□ 0.19
RHBDL3P58872 LINC00969-253ENST00000625338 804 ntTSL 5 BASIC16.23■□□□□ 0.19
RHBDL3P58872 ADH1B-207ENST00000639454 1210 ntTSL 5 BASIC16.23■□□□□ 0.19
RHBDL3P58872 LINC00638-201ENST00000555578 2518 ntBASIC16.23■□□□□ 0.19
RHBDL3P58872 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
RHBDL3P58872 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
RHBDL3P58872 AC072061.1-201ENST00000569710 2234 ntBASIC16.23■□□□□ 0.19
RHBDL3P58872 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
RHBDL3P58872 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC16.23■□□□□ 0.19
RHBDL3P58872 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
RHBDL3P58872 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC16.23■□□□□ 0.19
RHBDL3P58872 RDX-218ENST00000544551 4117 ntTSL 2 BASIC16.23■□□□□ 0.19
RHBDL3P58872 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RHBDL3P58872 STAMBP-204ENST00000409707 1649 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
RHBDL3P58872 GPATCH2L-202ENST00000312858 2438 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
RHBDL3P58872 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
RHBDL3P58872 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RHBDL3P58872 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
RHBDL3P58872 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC16.22■□□□□ 0.19
RHBDL3P58872 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
RHBDL3P58872 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RHBDL3P58872 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RHBDL3P58872 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RHBDL3P58872 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RHBDL3P58872 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RHBDL3P58872 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RHBDL3P58872 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
RHBDL3P58872 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RHBDL3P58872 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RHBDL3P58872 RSPH4A-202ENST00000368580 1410 ntTSL 5 BASIC16.22■□□□□ 0.19
RHBDL3P58872 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC16.22■□□□□ 0.19
RHBDL3P58872 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC16.22■□□□□ 0.19
RHBDL3P58872 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
RHBDL3P58872 SNORD23-201ENST00000408876 110 ntBASIC16.22■□□□□ 0.19
RHBDL3P58872 LINC02026-202ENST00000414309 772 ntTSL 3 BASIC16.22■□□□□ 0.19
RHBDL3P58872 AL158207.2-201ENST00000414926 266 ntTSL 5 BASIC16.22■□□□□ 0.19
RHBDL3P58872 PHBP10-201ENST00000416467 784 ntBASIC16.22■□□□□ 0.19
RHBDL3P58872 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC16.22■□□□□ 0.19
RHBDL3P58872 AL136084.1-201ENST00000449172 318 ntBASIC16.22■□□□□ 0.19
RHBDL3P58872 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC16.22■□□□□ 0.19
RHBDL3P58872 AC112250.1-201ENST00000504640 745 ntBASIC16.22■□□□□ 0.19
RHBDL3P58872 SMAD1-AS1-201ENST00000513542 481 ntTSL 2 BASIC16.22■□□□□ 0.19
RHBDL3P58872 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC16.22■□□□□ 0.19
RHBDL3P58872 IGHEP2-201ENST00000519308 1256 ntBASIC16.22■□□□□ 0.19
RHBDL3P58872 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC16.22■□□□□ 0.19
RHBDL3P58872 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC16.22■□□□□ 0.19
RHBDL3P58872 MIR4746-201ENST00000579802 71 ntBASIC16.22■□□□□ 0.19
RHBDL3P58872 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
RHBDL3P58872 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC16.22■□□□□ 0.19
RHBDL3P58872 ABR-228ENST00000574437 3196 ntTSL 5 BASIC16.22■□□□□ 0.19
RHBDL3P58872 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RHBDL3P58872 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC16.22■□□□□ 0.19
RHBDL3P58872 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RHBDL3P58872 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC16.22■□□□□ 0.19
RHBDL3P58872 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RHBDL3P58872 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC16.22■□□□□ 0.19
RHBDL3P58872 KRT26-201ENST00000335552 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RHBDL3P58872 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RHBDL3P58872 OS9-204ENST00000389146 2091 ntTSL 2 BASIC16.22■□□□□ 0.19
RHBDL3P58872 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RHBDL3P58872 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RHBDL3P58872 VAPB-202ENST00000395802 1834 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RHBDL3P58872 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC16.21■□□□□ 0.19
RHBDL3P58872 AC023794.5-201ENST00000564380 2157 ntBASIC16.21■□□□□ 0.19
RHBDL3P58872 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
RHBDL3P58872 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
RHBDL3P58872 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
RHBDL3P58872 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RHBDL3P58872 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC16.21■□□□□ 0.19
RHBDL3P58872 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RHBDL3P58872 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RHBDL3P58872 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RHBDL3P58872 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RHBDL3P58872 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
RHBDL3P58872 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
RHBDL3P58872 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
RHBDL3P58872 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RHBDL3P58872 PXK-210ENST00000479241 2817 ntTSL 2 BASIC16.21■□□□□ 0.19
RHBDL3P58872 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
RHBDL3P58872 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC16.21■□□□□ 0.19
RHBDL3P58872 LINC00675-202ENST00000581851 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RHBDL3P58872 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC16.21■□□□□ 0.19
RHBDL3P58872 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
RHBDL3P58872 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RHBDL3P58872 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
RHBDL3P58872 ZNF570-202ENST00000586475 1985 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RHBDL3P58872 PDCD6-201ENST00000264933 1135 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
RHBDL3P58872 HIGD2A-201ENST00000274787 668 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RHBDL3P58872 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
RHBDL3P58872 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RHBDL3P58872 CCL19-202ENST00000378800 414 ntTSL 2 BASIC16.21■□□□□ 0.19
RHBDL3P58872 SERF2-204ENST00000402131 586 ntTSL 2 BASIC16.21■□□□□ 0.19
RHBDL3P58872 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RHBDL3P58872 RPL3P5-201ENST00000441645 1232 ntBASIC16.21■□□□□ 0.19
RHBDL3P58872 AC133141.1-201ENST00000443015 339 ntBASIC16.21■□□□□ 0.19
RHBDL3P58872 RNA5SP420-201ENST00000516997 137 ntBASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms