Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LIG3P49916 AC010141.1-201ENST00000411585 623 ntBASIC14.84□□□□□ -0.03
LIG3P49916 PTPA-218ENST00000435132 618 ntTSL 2 BASIC14.84□□□□□ -0.03
LIG3P49916 ATP6V0CP2-201ENST00000469409 207 ntBASIC14.84□□□□□ -0.03
LIG3P49916 GCOM2-201ENST00000509133 1104 ntBASIC14.84□□□□□ -0.03
LIG3P49916 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC14.84□□□□□ -0.03
LIG3P49916 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC14.84□□□□□ -0.03
LIG3P49916 VPS18-202ENST00000558474 873 ntTSL 3 BASIC14.84□□□□□ -0.03
LIG3P49916 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC14.84□□□□□ -0.03
LIG3P49916 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC14.84□□□□□ -0.03
LIG3P49916 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LIG3P49916 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC14.84□□□□□ -0.03
LIG3P49916 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LIG3P49916 BX088702.1-201ENST00000610784 235 ntBASIC14.84□□□□□ -0.03
LIG3P49916 FLT4-212ENST00000619105 3806 ntTSL 5 BASIC14.84□□□□□ -0.03
LIG3P49916 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
LIG3P49916 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
LIG3P49916 GMEB2-203ENST00000370077 4223 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LIG3P49916 MAN2C1-242ENST00000569482 3177 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LIG3P49916 GRN-222ENST00000639447 1314 ntTSL 2 BASIC14.84□□□□□ -0.03
LIG3P49916 VWA5B2-201ENST00000273794 3486 ntTSL 2 BASIC14.84□□□□□ -0.03
LIG3P49916 ZFYVE27-205ENST00000370613 2669 ntTSL 2 BASIC14.84□□□□□ -0.03
LIG3P49916 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC14.84□□□□□ -0.03
LIG3P49916 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LIG3P49916 FCHSD1-209ENST00000522783 2477 ntTSL 5 BASIC14.84□□□□□ -0.03
LIG3P49916 AC020907.1-201ENST00000616460 1350 ntBASIC14.84□□□□□ -0.03
LIG3P49916 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LIG3P49916 CPT1C-204ENST00000405931 2785 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
LIG3P49916 PLA2G6-202ENST00000335539 3060 ntTSL 5 BASIC14.84□□□□□ -0.03
LIG3P49916 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LIG3P49916 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
LIG3P49916 DYNC1I1-202ENST00000359388 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LIG3P49916 AC090643.2-201ENST00000623442 2029 ntBASIC14.83□□□□□ -0.03
LIG3P49916 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
LIG3P49916 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
LIG3P49916 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
LIG3P49916 ABCB7-203ENST00000373394 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.03
LIG3P49916 DYNC1I1-201ENST00000324972 2950 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
LIG3P49916 PLCB3-201ENST00000279230 4197 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
LIG3P49916 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LIG3P49916 HARS-207ENST00000504156 3334 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIG3P49916 AC134407.3-201ENST00000624035 2139 ntBASIC14.83□□□□□ -0.04
LIG3P49916 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC14.83□□□□□ -0.04
LIG3P49916 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
LIG3P49916 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
LIG3P49916 STK3-218ENST00000617590 2485 ntTSL 5 BASIC14.83□□□□□ -0.04
LIG3P49916 RBM47-201ENST00000295971 4056 ntAPPRIS ALT1 TSL 5 BASIC14.83□□□□□ -0.04
LIG3P49916 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIG3P49916 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIG3P49916 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
LIG3P49916 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC14.83□□□□□ -0.04
LIG3P49916 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC14.83□□□□□ -0.04
LIG3P49916 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIG3P49916 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC14.83□□□□□ -0.04
LIG3P49916 AC099548.2-209ENST00000480264 625 ntBASIC14.83□□□□□ -0.04
LIG3P49916 AP001258.2-201ENST00000529891 490 ntBASIC14.83□□□□□ -0.04
LIG3P49916 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIG3P49916 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIG3P49916 AC005730.2-201ENST00000564549 1184 ntBASIC14.83□□□□□ -0.04
LIG3P49916 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC14.83□□□□□ -0.04
LIG3P49916 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIG3P49916 AC007663.3-201ENST00000609632 465 ntBASIC14.83□□□□□ -0.04
LIG3P49916 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIG3P49916 CMIP-208ENST00000566462 3512 ntTSL 4 BASIC14.83□□□□□ -0.04
LIG3P49916 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
LIG3P49916 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC14.83□□□□□ -0.04
LIG3P49916 WDR26-201ENST00000414423 6872 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIG3P49916 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIG3P49916 WTH3DI-201ENST00000623617 3032 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
LIG3P49916 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIG3P49916 PAX8-202ENST00000263335 3735 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LIG3P49916 BHLHE40-AS1-204ENST00000620618 2355 ntTSL 2 BASIC14.83□□□□□ -0.04
LIG3P49916 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIG3P49916 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC14.83□□□□□ -0.04
LIG3P49916 AC104129.1-202ENST00000480694 4481 ntTSL 2 BASIC14.83□□□□□ -0.04
LIG3P49916 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
LIG3P49916 YTHDF3-201ENST00000517371 3122 ntTSL 3 BASIC14.83□□□□□ -0.04
LIG3P49916 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC14.83□□□□□ -0.04
LIG3P49916 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC14.83□□□□□ -0.04
LIG3P49916 E2F3P2-201ENST00000447755 1422 ntBASIC14.83□□□□□ -0.04
LIG3P49916 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIG3P49916 AC110048.1-201ENST00000604293 2157 ntBASIC14.83□□□□□ -0.04
LIG3P49916 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIG3P49916 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIG3P49916 INTS13-201ENST00000261191 2974 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIG3P49916 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
LIG3P49916 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIG3P49916 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIG3P49916 MAD1L1-201ENST00000265854 2718 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIG3P49916 INSRR-201ENST00000368195 5101 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIG3P49916 LSM14A-203ENST00000544216 3596 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIG3P49916 CT62-203ENST00000566432 2822 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
LIG3P49916 SAP30BP-202ENST00000355423 2439 ntTSL 2 BASIC14.82□□□□□ -0.04
LIG3P49916 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIG3P49916 ZNF384-201ENST00000319770 3266 ntTSL 2 BASIC14.82□□□□□ -0.04
LIG3P49916 PCDHB19P-202ENST00000625133 2914 ntBASIC14.82□□□□□ -0.04
LIG3P49916 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIG3P49916 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIG3P49916 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIG3P49916 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms