Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC15.9■□□□□ 0.14
SMARCA1P28370 AC026120.2-201ENST00000617239 309 ntBASIC15.9■□□□□ 0.14
SMARCA1P28370 LINC00969-321ENST00000629990 806 ntTSL 5 BASIC15.9■□□□□ 0.14
SMARCA1P28370 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
SMARCA1P28370 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SMARCA1P28370 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC15.9■□□□□ 0.14
SMARCA1P28370 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SMARCA1P28370 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
SMARCA1P28370 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
SMARCA1P28370 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SMARCA1P28370 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC15.9■□□□□ 0.14
SMARCA1P28370 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SMARCA1P28370 PAX5-204ENST00000377852 1472 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SMARCA1P28370 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SMARCA1P28370 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC15.9■□□□□ 0.14
SMARCA1P28370 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.9■□□□□ 0.14
SMARCA1P28370 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
SMARCA1P28370 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC15.89■□□□□ 0.14
SMARCA1P28370 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
SMARCA1P28370 KRT17P4-205ENST00000579946 2555 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SMARCA1P28370 LINC01114-202ENST00000424321 2112 ntTSL 2 BASIC15.89■□□□□ 0.13
SMARCA1P28370 FUCA1P1-201ENST00000374476 1351 ntBASIC15.89■□□□□ 0.13
SMARCA1P28370 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC15.89■□□□□ 0.13
SMARCA1P28370 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SMARCA1P28370 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SMARCA1P28370 AC104581.4-201ENST00000623126 3052 ntBASIC15.89■□□□□ 0.13
SMARCA1P28370 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.89■□□□□ 0.13
SMARCA1P28370 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SMARCA1P28370 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
SMARCA1P28370 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SMARCA1P28370 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SMARCA1P28370 AL772337.1-201ENST00000399186 2014 ntTSL 5 BASIC15.89■□□□□ 0.13
SMARCA1P28370 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC15.89■□□□□ 0.13
SMARCA1P28370 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
SMARCA1P28370 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SMARCA1P28370 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SMARCA1P28370 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
SMARCA1P28370 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC15.89■□□□□ 0.13
SMARCA1P28370 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
SMARCA1P28370 PSMC3IP-201ENST00000253789 1408 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SMARCA1P28370 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
SMARCA1P28370 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SMARCA1P28370 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
SMARCA1P28370 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SMARCA1P28370 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SMARCA1P28370 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SMARCA1P28370 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC15.89■□□□□ 0.13
SMARCA1P28370 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC15.89■□□□□ 0.13
SMARCA1P28370 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
SMARCA1P28370 RN7SL8P-201ENST00000461771 266 ntBASIC15.89■□□□□ 0.13
SMARCA1P28370 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC15.89■□□□□ 0.13
SMARCA1P28370 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SMARCA1P28370 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
SMARCA1P28370 IFI27L1-211ENST00000557066 580 ntTSL 3 BASIC15.89■□□□□ 0.13
SMARCA1P28370 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC15.89■□□□□ 0.13
SMARCA1P28370 CES1P2-201ENST00000566467 1242 ntBASIC15.89■□□□□ 0.13
SMARCA1P28370 COX5A-205ENST00000568517 582 ntTSL 3 BASIC15.89■□□□□ 0.13
SMARCA1P28370 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC15.89■□□□□ 0.13
SMARCA1P28370 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC15.89■□□□□ 0.13
SMARCA1P28370 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SMARCA1P28370 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SMARCA1P28370 AC024075.2-201ENST00000598112 1473 ntBASIC15.89■□□□□ 0.13
SMARCA1P28370 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
SMARCA1P28370 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SMARCA1P28370 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SMARCA1P28370 F2-205ENST00000530231 1849 ntTSL 5 BASIC15.89■□□□□ 0.13
SMARCA1P28370 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
SMARCA1P28370 MAPT-IT1-201ENST00000624111 3016 ntBASIC15.89■□□□□ 0.13
SMARCA1P28370 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SMARCA1P28370 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC15.89■□□□□ 0.13
SMARCA1P28370 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SMARCA1P28370 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SMARCA1P28370 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC15.88■□□□□ 0.13
SMARCA1P28370 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
SMARCA1P28370 DLG2-205ENST00000398301 2070 ntTSL 2 BASIC15.88■□□□□ 0.13
SMARCA1P28370 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SMARCA1P28370 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC15.88■□□□□ 0.13
SMARCA1P28370 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
SMARCA1P28370 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
SMARCA1P28370 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC15.88■□□□□ 0.13
SMARCA1P28370 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SMARCA1P28370 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
SMARCA1P28370 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC15.88■□□□□ 0.13
SMARCA1P28370 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SMARCA1P28370 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SMARCA1P28370 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.88■□□□□ 0.13
SMARCA1P28370 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SMARCA1P28370 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
SMARCA1P28370 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SMARCA1P28370 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SMARCA1P28370 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SMARCA1P28370 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC15.88■□□□□ 0.13
SMARCA1P28370 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC15.88■□□□□ 0.13
SMARCA1P28370 AC041040.1-201ENST00000425197 460 ntBASIC15.88■□□□□ 0.13
SMARCA1P28370 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC15.88■□□□□ 0.13
SMARCA1P28370 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC15.88■□□□□ 0.13
SMARCA1P28370 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC15.88■□□□□ 0.13
SMARCA1P28370 GNG10P1-201ENST00000452289 199 ntBASIC15.88■□□□□ 0.13
SMARCA1P28370 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC15.88■□□□□ 0.13
SMARCA1P28370 CHIC2-204ENST00000512964 711 ntTSL 5 BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms