Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC14.29□□□□□ -0.12
HMGA1P17096 URAHP-205ENST00000610227 398 ntBASIC14.29□□□□□ -0.12
HMGA1P17096 Metazoa_SRP.141-201ENST00000615072 282 ntBASIC14.29□□□□□ -0.12
HMGA1P17096 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC14.29□□□□□ -0.12
HMGA1P17096 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
HMGA1P17096 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC14.29□□□□□ -0.12
HMGA1P17096 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGA1P17096 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGA1P17096 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.12
HMGA1P17096 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HMGA1P17096 LINC00969-231ENST00000597482 1476 ntTSL 5 BASIC14.29□□□□□ -0.12
HMGA1P17096 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC14.29□□□□□ -0.12
HMGA1P17096 ERG-211ENST00000453032 1595 ntTSL 2 BASIC14.29□□□□□ -0.12
HMGA1P17096 MKRN2-203ENST00000448482 1679 ntTSL 5 BASIC14.29□□□□□ -0.12
HMGA1P17096 ZFYVE19-215ENST00000570108 1669 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
HMGA1P17096 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
HMGA1P17096 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGA1P17096 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HMGA1P17096 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC14.29□□□□□ -0.12
HMGA1P17096 AC020917.4-201ENST00000623994 1999 ntBASIC14.29□□□□□ -0.12
HMGA1P17096 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HMGA1P17096 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGA1P17096 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC14.29□□□□□ -0.12
HMGA1P17096 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGA1P17096 AL009178.2-201ENST00000597278 2719 ntBASIC14.28□□□□□ -0.12
HMGA1P17096 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HMGA1P17096 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGA1P17096 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGA1P17096 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC14.28□□□□□ -0.12
HMGA1P17096 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGA1P17096 CALML6-201ENST00000307786 1101 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGA1P17096 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGA1P17096 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HMGA1P17096 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGA1P17096 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
HMGA1P17096 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGA1P17096 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGA1P17096 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC14.28□□□□□ -0.12
HMGA1P17096 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
HMGA1P17096 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HMGA1P17096 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGA1P17096 PGK1P2-201ENST00000431702 1214 ntBASIC14.28□□□□□ -0.12
HMGA1P17096 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC14.28□□□□□ -0.12
HMGA1P17096 AC019118.1-201ENST00000454530 435 ntTSL 3 BASIC14.28□□□□□ -0.12
HMGA1P17096 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC14.28□□□□□ -0.12
HMGA1P17096 RN7SL288P-201ENST00000490496 291 ntBASIC14.28□□□□□ -0.12
HMGA1P17096 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGA1P17096 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC14.28□□□□□ -0.12
HMGA1P17096 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGA1P17096 AL139316.1-201ENST00000555643 568 ntTSL 3 BASIC14.28□□□□□ -0.12
HMGA1P17096 UBE2V1-222ENST00000557021 2258 ntTSL 5 BASIC14.28□□□□□ -0.12
HMGA1P17096 AC026470.4-201ENST00000565812 308 ntTSL 3 BASIC14.28□□□□□ -0.12
HMGA1P17096 FAM187B2P-201ENST00000577135 713 ntBASIC14.28□□□□□ -0.12
HMGA1P17096 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC14.28□□□□□ -0.12
HMGA1P17096 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGA1P17096 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGA1P17096 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
HMGA1P17096 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGA1P17096 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
HMGA1P17096 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HMGA1P17096 SLC38A5-210ENST00000595796 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGA1P17096 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.12
HMGA1P17096 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.12
HMGA1P17096 SPDYA-202ENST00000379579 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HMGA1P17096 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC14.27□□□□□ -0.12
HMGA1P17096 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
HMGA1P17096 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HMGA1P17096 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
HMGA1P17096 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HMGA1P17096 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
HMGA1P17096 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC14.27□□□□□ -0.12
HMGA1P17096 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HMGA1P17096 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
HMGA1P17096 SYBU-217ENST00000528331 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
HMGA1P17096 PTGER4P2-201ENST00000328411 252 ntBASIC14.27□□□□□ -0.13
HMGA1P17096 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC14.27□□□□□ -0.13
HMGA1P17096 AL355482.2-201ENST00000428646 1145 ntTSL 2 BASIC14.27□□□□□ -0.13
HMGA1P17096 HLA-DPA2-205ENST00000433582 733 ntBASIC14.27□□□□□ -0.13
HMGA1P17096 PTGER4P3-201ENST00000458150 252 ntBASIC14.27□□□□□ -0.13
HMGA1P17096 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC14.27□□□□□ -0.13
HMGA1P17096 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC14.27□□□□□ -0.13
HMGA1P17096 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC14.27□□□□□ -0.13
HMGA1P17096 CMTM1-219ENST00000533953 934 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
HMGA1P17096 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC14.27□□□□□ -0.13
HMGA1P17096 KCCAT198-201ENST00000549251 549 ntTSL 4 BASIC14.27□□□□□ -0.13
HMGA1P17096 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC14.27□□□□□ -0.13
HMGA1P17096 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC14.27□□□□□ -0.13
HMGA1P17096 SRP14-204ENST00000558720 780 ntTSL 2 BASIC14.27□□□□□ -0.13
HMGA1P17096 AL118516.1-201ENST00000564152 670 ntBASIC14.27□□□□□ -0.13
HMGA1P17096 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC14.27□□□□□ -0.13
HMGA1P17096 ETV2-207ENST00000619399 994 ntTSL 5 BASIC14.27□□□□□ -0.13
HMGA1P17096 AC137723.2-201ENST00000623540 398 ntBASIC14.27□□□□□ -0.13
HMGA1P17096 LINC00969-321ENST00000629990 806 ntTSL 5 BASIC14.27□□□□□ -0.13
HMGA1P17096 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC14.27□□□□□ -0.13
HMGA1P17096 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HMGA1P17096 AC072061.1-201ENST00000569710 2234 ntBASIC14.27□□□□□ -0.13
HMGA1P17096 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HMGA1P17096 TMEM78-201ENST00000323223 2175 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
HMGA1P17096 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HMGA1P17096 AC011474.4-201ENST00000623523 2076 ntBASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms