Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC17.32■□□□□ 0.36
SHANK3Q9BYB0 AC073869.1-201ENST00000415574 2762 ntBASIC17.32■□□□□ 0.36
SHANK3Q9BYB0 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 FAM238C-202ENST00000639963 1787 ntTSL 2 BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 NAMA-207ENST00000605707 1748 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 LINC01137-201ENST00000424989 1395 ntTSL 2 BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 PRDX1-202ENST00000319248 1021 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 MRPL55-207ENST00000366733 834 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 PSMA7-202ENST00000370861 773 ntTSL 5 BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 CD3G-202ENST00000392883 1179 ntTSL 5 BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 AL121972.2-201ENST00000431108 556 ntTSL 4 BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 HNRNPA1P73-201ENST00000446472 928 ntBASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 RNF7-205ENST00000480908 782 ntTSL 4 BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 LUCAT1-201ENST00000511918 828 ntTSL 3 BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 AC004923.1-201ENST00000527543 776 ntTSL 5 BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 TMEM241-208ENST00000542162 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 RAB42P1-201ENST00000555078 316 ntBASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 TEX38-204ENST00000564373 637 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 CYP2B7P-202ENST00000593298 1087 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 Metazoa_SRP.68-201ENST00000612673 282 ntBASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 DRD2-210ENST00000544518 2473 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 PDXDC1-218ENST00000627450 2683 ntTSL 2 BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHANK3Q9BYB0 FKBP4P1-201ENST00000507284 1347 ntBASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 RGS6-202ENST00000355512 1564 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 MIR324-201ENST00000362183 83 ntBASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 ULBP3-201ENST00000367339 988 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 OR2T32P-201ENST00000403423 963 ntBASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 AC064853.1-201ENST00000413096 540 ntTSL 4 BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 PTPA-219ENST00000435305 530 ntTSL 2 BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 AC006059.1-201ENST00000438017 722 ntTSL 5 BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 LINC01823-204ENST00000438722 794 ntTSL 3 BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 COL18A1-AS2-201ENST00000446475 552 ntTSL 4 BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 AL357140.1-201ENST00000454104 424 ntTSL 2 BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 RPL30P11-202ENST00000509114 358 ntTSL 3 BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 AC022634.2-201ENST00000521504 382 ntTSL 3 BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 AC126177.4-201ENST00000547452 731 ntTSL 5 BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 INCA1-202ENST00000574617 1260 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 DMRTC1-201ENST00000595412 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 AL161937.2-201ENST00000615503 403 ntTSL 2 BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 AC244097.1-201ENST00000621631 1216 ntBASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 AC245427.1-201ENST00000633705 760 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 PPP2R2C-204ENST00000506140 1780 ntTSL 2 BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 KIAA0391-211ENST00000605870 1406 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 LINC01114-202ENST00000424321 2112 ntTSL 2 BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 OR52N1-201ENST00000317078 963 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 LCE4A-201ENST00000335535 388 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 MT-ND6-201ENST00000361681 525 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 U3.41-201ENST00000408711 219 ntBASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 AL627095.1-201ENST00000414775 321 ntBASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 AC079325.1-201ENST00000430386 857 ntBASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 Z69733.1-201ENST00000445990 632 ntTSL 3 BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 CCNL2P1-201ENST00000512846 969 ntBASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 ZNF268-208ENST00000539248 759 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 ZNF268-212ENST00000542711 861 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 IFI27L1-203ENST00000553664 647 ntTSL 5 BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 ALOX12P1-201ENST00000579299 1229 ntBASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 Metazoa_SRP.152-201ENST00000614413 286 ntBASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 APOBEC3A-205ENST00000618553 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 AC127002.1-201ENST00000619123 455 ntBASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 BX088651.4-202ENST00000428895 1479 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHANK3Q9BYB0 TRMT11-202ENST00000368332 1889 ntAPPRIS ALT1 TSL 2 BASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 CR383656.2-201ENST00000548656 2254 ntBASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 FTO-214ENST00000636218 2227 ntTSL 5 BASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 EGLN3-205ENST00000547327 2849 ntBASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms