Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SMARCA2-209ENST00000382203 5867 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
PDLIM3Q53GG5 EGFR-207ENST00000455089 3844 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
PDLIM3Q53GG5 OXR1-202ENST00000312046 4406 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
PDLIM3Q53GG5 F10-203ENST00000409306 1450 ntTSL 3 BASIC11.77□□□□□ -0.52
PDLIM3Q53GG5 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
PDLIM3Q53GG5 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.52
PDLIM3Q53GG5 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 COL3A1-201ENST00000304636 5543 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 LRRC15-201ENST00000347624 5883 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 MFSD8-241ENST00000641686 4991 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 AC098935.1-201ENST00000446057 611 ntBASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 KRT18P25-201ENST00000508931 1278 ntBASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 CFL1-206ENST00000527344 962 ntTSL 2 BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 AC091544.8-201ENST00000619490 361 ntBASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 AC138951.2-201ENST00000623455 1161 ntBASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 MYO9B-201ENST00000397274 7532 ntTSL 5 BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 TBL1X-203ENST00000407597 5596 ntTSL 2 BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 ARFGEF1-201ENST00000262215 7225 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 CYP51A1P3-201ENST00000400072 1428 ntBASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
PDLIM3Q53GG5 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 STAG3-206ENST00000426455 4450 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 CHD3-203ENST00000380358 7356 ntTSL 2 BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 MSRA-203ENST00000441698 788 ntTSL 2 BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 KSR1-207ENST00000578981 748 ntTSL 4 BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 DGAT2L7P-201ENST00000602462 744 ntBASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 AC104506.1-201ENST00000609247 429 ntBASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 AC073352.2-201ENST00000609385 439 ntBASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 AC005252.2-201ENST00000624630 1141 ntBASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms