Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 AC078814.4-201ENST00000546650 327 ntBASIC16.13■□□□□ 0.17
SHROOM1Q2M3G4 AC090617.4-201ENST00000572404 422 ntTSL 3 BASIC16.13■□□□□ 0.17
SHROOM1Q2M3G4 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC16.13■□□□□ 0.17
SHROOM1Q2M3G4 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
SHROOM1Q2M3G4 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHROOM1Q2M3G4 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC16.13■□□□□ 0.17
SHROOM1Q2M3G4 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHROOM1Q2M3G4 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHROOM1Q2M3G4 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHROOM1Q2M3G4 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHROOM1Q2M3G4 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHROOM1Q2M3G4 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC16.13■□□□□ 0.17
SHROOM1Q2M3G4 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHROOM1Q2M3G4 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC16.13■□□□□ 0.17
SHROOM1Q2M3G4 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC16.13■□□□□ 0.17
SHROOM1Q2M3G4 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
SHROOM1Q2M3G4 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC16.13■□□□□ 0.17
SHROOM1Q2M3G4 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHROOM1Q2M3G4 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
SHROOM1Q2M3G4 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHROOM1Q2M3G4 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHROOM1Q2M3G4 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 MAGEC3-205ENST00000544766 1707 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 TPPP3-205ENST00000564104 1736 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 MAL-204ENST00000354078 831 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 RNA5SP491-201ENST00000362936 118 ntBASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 U3.5-201ENST00000363448 216 ntBASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 PPM1N-203ENST00000396737 872 ntTSL 2 BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 ACTBP7-201ENST00000418351 1124 ntBASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 GOLGA6L16P-201ENST00000441780 1299 ntBASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 AC092896.1-201ENST00000465850 380 ntBASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 IGHEP2-201ENST00000519308 1256 ntBASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 AC027139.1-201ENST00000565286 951 ntBASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 SNCAIP-222ENST00000542191 2729 ntTSL 5 BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
SHROOM1Q2M3G4 CLUL1-202ENST00000400606 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 WDR81-205ENST00000437219 3184 ntTSL 2 BASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 RIDA-201ENST00000254878 1057 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 VENTXP4-201ENST00000449029 958 ntBASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 LINC02369-202ENST00000540745 801 ntTSL 5 BASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 AC026470.4-201ENST00000565812 308 ntTSL 3 BASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 GGNBP1-204ENST00000613113 887 ntBASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
SHROOM1Q2M3G4 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms