Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC14.66□□□□□ -0.06
HDAC4P56524 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HDAC4P56524 AC073869.2-201ENST00000417338 1026 ntBASIC14.66□□□□□ -0.06
HDAC4P56524 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC14.66□□□□□ -0.06
HDAC4P56524 TSACC-208ENST00000481479 741 ntTSL 2 BASIC14.66□□□□□ -0.06
HDAC4P56524 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HDAC4P56524 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC14.66□□□□□ -0.06
HDAC4P56524 MIR4754-201ENST00000582477 89 ntBASIC14.66□□□□□ -0.06
HDAC4P56524 AC103810.3-201ENST00000583567 96 ntBASIC14.66□□□□□ -0.06
HDAC4P56524 IRF3-215ENST00000596822 823 ntTSL 3 BASIC14.66□□□□□ -0.06
HDAC4P56524 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC14.66□□□□□ -0.06
HDAC4P56524 AF254983.2-201ENST00000612331 135 ntBASIC14.66□□□□□ -0.06
HDAC4P56524 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC14.66□□□□□ -0.06
HDAC4P56524 AC092053.3-201ENST00000641308 4975 ntBASIC14.66□□□□□ -0.06
HDAC4P56524 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
HDAC4P56524 OS9-201ENST00000257966 2505 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
HDAC4P56524 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HDAC4P56524 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HDAC4P56524 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC14.66□□□□□ -0.06
HDAC4P56524 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
HDAC4P56524 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC14.66□□□□□ -0.06
HDAC4P56524 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HDAC4P56524 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HDAC4P56524 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC14.66□□□□□ -0.06
HDAC4P56524 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
HDAC4P56524 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
HDAC4P56524 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC14.66□□□□□ -0.06
HDAC4P56524 KRT8P31-201ENST00000504812 1408 ntBASIC14.66□□□□□ -0.06
HDAC4P56524 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HDAC4P56524 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HDAC4P56524 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
HDAC4P56524 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC14.65□□□□□ -0.06
HDAC4P56524 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
HDAC4P56524 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
HDAC4P56524 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HDAC4P56524 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HDAC4P56524 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HDAC4P56524 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HDAC4P56524 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HDAC4P56524 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
HDAC4P56524 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HDAC4P56524 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
HDAC4P56524 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HDAC4P56524 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
HDAC4P56524 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HDAC4P56524 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
HDAC4P56524 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
HDAC4P56524 MIR645-201ENST00000385283 94 ntBASIC14.65□□□□□ -0.06
HDAC4P56524 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC14.65□□□□□ -0.06
HDAC4P56524 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC14.65□□□□□ -0.06
HDAC4P56524 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC14.65□□□□□ -0.06
HDAC4P56524 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC14.65□□□□□ -0.06
HDAC4P56524 MSRA-203ENST00000441698 788 ntTSL 2 BASIC14.65□□□□□ -0.06
HDAC4P56524 Z97180.1-201ENST00000445173 988 ntBASIC14.65□□□□□ -0.06
HDAC4P56524 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC14.65□□□□□ -0.06
HDAC4P56524 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC14.65□□□□□ -0.06
HDAC4P56524 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC14.65□□□□□ -0.06
HDAC4P56524 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC14.65□□□□□ -0.06
HDAC4P56524 SLC25A15P3-201ENST00000505530 290 ntBASIC14.65□□□□□ -0.06
HDAC4P56524 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC14.65□□□□□ -0.06
HDAC4P56524 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC14.65□□□□□ -0.06
HDAC4P56524 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
HDAC4P56524 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC14.65□□□□□ -0.06
HDAC4P56524 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC14.65□□□□□ -0.06
HDAC4P56524 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HDAC4P56524 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC14.65□□□□□ -0.06
HDAC4P56524 AC026803.1-201ENST00000569130 274 ntBASIC14.65□□□□□ -0.06
HDAC4P56524 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC14.65□□□□□ -0.06
HDAC4P56524 MIR3619-201ENST00000579667 83 ntBASIC14.65□□□□□ -0.06
HDAC4P56524 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
HDAC4P56524 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.06
HDAC4P56524 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC14.65□□□□□ -0.06
HDAC4P56524 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC14.65□□□□□ -0.06
HDAC4P56524 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC14.65□□□□□ -0.06
HDAC4P56524 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC14.65□□□□□ -0.06
HDAC4P56524 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HDAC4P56524 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
HDAC4P56524 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
HDAC4P56524 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HDAC4P56524 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HDAC4P56524 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HDAC4P56524 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HDAC4P56524 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
HDAC4P56524 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
HDAC4P56524 AL133338.1-201ENST00000565695 1517 ntBASIC14.65□□□□□ -0.06
HDAC4P56524 AL591122.2-201ENST00000624125 1853 ntBASIC14.65□□□□□ -0.06
HDAC4P56524 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HDAC4P56524 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC14.65□□□□□ -0.06
HDAC4P56524 AC135782.3-201ENST00000562782 2105 ntBASIC14.65□□□□□ -0.06
HDAC4P56524 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HDAC4P56524 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC14.65□□□□□ -0.06
HDAC4P56524 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
HDAC4P56524 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
HDAC4P56524 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HDAC4P56524 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
HDAC4P56524 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HDAC4P56524 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
HDAC4P56524 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HDAC4P56524 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
HDAC4P56524 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms