Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 GRAMD4-201ENST00000361034 4315 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TPM1P09493 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC15.53■□□□□ 0.08
TPM1P09493 DNAJC3-202ENST00000602402 5591 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TPM1P09493 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TPM1P09493 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TPM1P09493 ZBTB20-206ENST00000464560 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TPM1P09493 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TPM1P09493 AC016582.3-202ENST00000443870 6580 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TPM1P09493 SLC26A6-202ENST00000337000 2317 ntTSL 2 BASIC15.52■□□□□ 0.08
TPM1P09493 GCOM1-214ENST00000587652 2329 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
TPM1P09493 KRT8P4-201ENST00000509735 1454 ntBASIC15.52■□□□□ 0.08
TPM1P09493 CASC4-201ENST00000299957 3962 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.08
TPM1P09493 PEX1-201ENST00000248633 4385 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TPM1P09493 CADM1-204ENST00000536727 3520 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TPM1P09493 SRD5A1-201ENST00000274192 7132 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TPM1P09493 TMEM104-204ENST00000582330 4679 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
TPM1P09493 STXBP5L-201ENST00000273666 9496 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
TPM1P09493 EMBP1-203ENST00000622787 4235 ntTSL 2 BASIC15.52■□□□□ 0.08
TPM1P09493 SIRPA-204ENST00000622179 4570 ntAPPRIS ALT1 TSL 5 BASIC15.52■□□□□ 0.08
TPM1P09493 CYP4F11-204ENST00000591841 2531 ntTSL 2 BASIC15.52■□□□□ 0.08
TPM1P09493 RC3H2-205ENST00000423239 3623 ntTSL 5 BASIC15.52■□□□□ 0.08
TPM1P09493 FCHSD1-209ENST00000522783 2477 ntTSL 5 BASIC15.52■□□□□ 0.08
TPM1P09493 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TPM1P09493 TMUB2-201ENST00000319511 2418 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
TPM1P09493 CDC20B-202ENST00000322374 1679 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TPM1P09493 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TPM1P09493 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC15.52■□□□□ 0.08
TPM1P09493 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC15.52■□□□□ 0.08
TPM1P09493 AC103592.1-201ENST00000394513 664 ntBASIC15.52■□□□□ 0.08
TPM1P09493 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TPM1P09493 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
TPM1P09493 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC15.52■□□□□ 0.08
TPM1P09493 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC15.52■□□□□ 0.08
TPM1P09493 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC15.52■□□□□ 0.08
TPM1P09493 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC15.52■□□□□ 0.08
TPM1P09493 LINC02560-201ENST00000596379 459 ntBASIC15.52■□□□□ 0.08
TPM1P09493 AC090386.2-201ENST00000623010 1039 ntBASIC15.52■□□□□ 0.08
TPM1P09493 AC006453.4-201ENST00000636949 1252 ntBASIC15.52■□□□□ 0.08
TPM1P09493 FOSB-212ENST00000592811 3089 ntTSL 2 BASIC15.52■□□□□ 0.08
TPM1P09493 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TPM1P09493 AFF2-202ENST00000342251 7313 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
TPM1P09493 EML1-203ENST00000334192 4064 ntTSL 5 BASIC15.52■□□□□ 0.07
TPM1P09493 AL031719.1-201ENST00000623365 2587 ntBASIC15.52■□□□□ 0.07
TPM1P09493 TPR-201ENST00000367478 9708 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TPM1P09493 DHX30-215ENST00000619982 3574 ntAPPRIS ALT1 TSL 5 BASIC15.52■□□□□ 0.07
TPM1P09493 SLC6A2-201ENST00000219833 2858 ntTSL 5 BASIC15.52■□□□□ 0.07
TPM1P09493 NEXN-201ENST00000330010 3195 ntTSL 2 BASIC15.52■□□□□ 0.07
TPM1P09493 AC025183.3-201ENST00000623526 1482 ntBASIC15.52■□□□□ 0.07
TPM1P09493 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
TPM1P09493 PIK3R6-204ENST00000619866 3041 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
TPM1P09493 DPY19L2P2-205ENST00000439473 3994 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TPM1P09493 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TPM1P09493 EIF2AK1-201ENST00000199389 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TPM1P09493 AC016245.1-201ENST00000570335 3204 ntTSL 2 BASIC15.51■□□□□ 0.07
TPM1P09493 HTR3A-201ENST00000299961 1994 ntTSL 2 BASIC15.51■□□□□ 0.07
TPM1P09493 SYNM-203ENST00000560674 5908 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TPM1P09493 SERPINH1-205ENST00000525876 2283 ntTSL 2 BASIC15.51■□□□□ 0.07
TPM1P09493 EEF2K-201ENST00000263026 7388 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
TPM1P09493 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TPM1P09493 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TPM1P09493 TGM1-201ENST00000206765 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TPM1P09493 ALDH3A2-201ENST00000176643 3928 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
TPM1P09493 CDK20-209ENST00000605159 1860 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TPM1P09493 SAP30BP-202ENST00000355423 2439 ntTSL 2 BASIC15.51■□□□□ 0.07
TPM1P09493 BCL2L13-214ENST00000543133 4975 ntTSL 2 BASIC15.51■□□□□ 0.07
TPM1P09493 BCL2L13-217ENST00000618481 4961 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
TPM1P09493 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TPM1P09493 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
TPM1P09493 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
TPM1P09493 GRAP-202ENST00000395635 834 ntTSL 2 BASIC15.51■□□□□ 0.07
TPM1P09493 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
TPM1P09493 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TPM1P09493 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC15.51■□□□□ 0.07
TPM1P09493 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC15.51■□□□□ 0.07
TPM1P09493 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC15.51■□□□□ 0.07
TPM1P09493 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
TPM1P09493 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
TPM1P09493 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
TPM1P09493 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC15.51■□□□□ 0.07
TPM1P09493 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC15.51■□□□□ 0.07
TPM1P09493 AC124068.2-201ENST00000569473 1109 ntBASIC15.51■□□□□ 0.07
TPM1P09493 LINC02084-201ENST00000606069 1096 ntBASIC15.51■□□□□ 0.07
TPM1P09493 AC138951.2-201ENST00000623455 1161 ntBASIC15.51■□□□□ 0.07
TPM1P09493 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC15.51■□□□□ 0.07
TPM1P09493 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TPM1P09493 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TPM1P09493 PRKN-205ENST00000366897 2877 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TPM1P09493 PRDM16-208ENST00000514189 4236 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
TPM1P09493 AKAP13-201ENST00000361243 9468 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
TPM1P09493 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
TPM1P09493 ASB3-204ENST00000406687 2205 ntTSL 2 BASIC15.51■□□□□ 0.07
TPM1P09493 PIK3AP1-201ENST00000339364 4803 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TPM1P09493 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
TPM1P09493 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC15.51■□□□□ 0.07
TPM1P09493 LARGE1-203ENST00000402320 3955 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TPM1P09493 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
TPM1P09493 HDLBP-204ENST00000391976 4489 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
TPM1P09493 FAM155A-201ENST00000375915 8503 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM1P09493 ADGRA1-201ENST00000392606 3438 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TPM1P09493 MAP7D2-202ENST00000379651 3930 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms