Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
USP39Q53GS9 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
USP39Q53GS9 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
USP39Q53GS9 AC012158.2-201ENST00000536546 354 ntBASIC14.27□□□□□ -0.13
USP39Q53GS9 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
USP39Q53GS9 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC14.27□□□□□ -0.13
USP39Q53GS9 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC14.27□□□□□ -0.13
USP39Q53GS9 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC14.27□□□□□ -0.13
USP39Q53GS9 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
USP39Q53GS9 AL021707.6-201ENST00000609212 491 ntBASIC14.27□□□□□ -0.13
USP39Q53GS9 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
USP39Q53GS9 PPIA-210ENST00000620047 827 ntTSL 5 BASIC14.27□□□□□ -0.13
USP39Q53GS9 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
USP39Q53GS9 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC14.27□□□□□ -0.13
USP39Q53GS9 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC14.27□□□□□ -0.13
USP39Q53GS9 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
USP39Q53GS9 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC14.27□□□□□ -0.13
USP39Q53GS9 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
USP39Q53GS9 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
USP39Q53GS9 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
USP39Q53GS9 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC14.27□□□□□ -0.13
USP39Q53GS9 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
USP39Q53GS9 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
USP39Q53GS9 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
USP39Q53GS9 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
USP39Q53GS9 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
USP39Q53GS9 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
USP39Q53GS9 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
USP39Q53GS9 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
USP39Q53GS9 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
USP39Q53GS9 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC14.26□□□□□ -0.13
USP39Q53GS9 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
USP39Q53GS9 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
USP39Q53GS9 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
USP39Q53GS9 AC025183.3-201ENST00000623526 1482 ntBASIC14.26□□□□□ -0.13
USP39Q53GS9 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
USP39Q53GS9 MYADML-201ENST00000474610 2147 ntBASIC14.26□□□□□ -0.13
USP39Q53GS9 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC14.26□□□□□ -0.13
USP39Q53GS9 AC011474.4-201ENST00000623523 2076 ntBASIC14.26□□□□□ -0.13
USP39Q53GS9 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
USP39Q53GS9 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
USP39Q53GS9 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
USP39Q53GS9 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
USP39Q53GS9 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
USP39Q53GS9 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
USP39Q53GS9 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
USP39Q53GS9 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
USP39Q53GS9 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC14.26□□□□□ -0.13
USP39Q53GS9 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
USP39Q53GS9 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC14.26□□□□□ -0.13
USP39Q53GS9 OR51A9P-201ENST00000422578 911 ntBASIC14.26□□□□□ -0.13
USP39Q53GS9 FAU-202ENST00000434372 533 ntTSL 2 BASIC14.26□□□□□ -0.13
USP39Q53GS9 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC14.26□□□□□ -0.13
USP39Q53GS9 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC14.26□□□□□ -0.13
USP39Q53GS9 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC14.26□□□□□ -0.13
USP39Q53GS9 RN7SL494P-201ENST00000461517 304 ntBASIC14.26□□□□□ -0.13
USP39Q53GS9 AC008026.2-201ENST00000495438 348 ntBASIC14.26□□□□□ -0.13
USP39Q53GS9 PGAM1P12-201ENST00000505622 748 ntBASIC14.26□□□□□ -0.13
USP39Q53GS9 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC14.26□□□□□ -0.13
USP39Q53GS9 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC14.26□□□□□ -0.13
USP39Q53GS9 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC14.26□□□□□ -0.13
USP39Q53GS9 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC14.26□□□□□ -0.13
USP39Q53GS9 NAMA-206ENST00000605377 509 ntTSL 5 BASIC14.26□□□□□ -0.13
USP39Q53GS9 AC010976.2-201ENST00000609697 852 ntBASIC14.26□□□□□ -0.13
USP39Q53GS9 AL359091.4-201ENST00000610052 409 ntBASIC14.26□□□□□ -0.13
USP39Q53GS9 AL118522.1-201ENST00000611368 560 ntBASIC14.26□□□□□ -0.13
USP39Q53GS9 AP001527.2-201ENST00000614441 631 ntBASIC14.26□□□□□ -0.13
USP39Q53GS9 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC14.26□□□□□ -0.13
USP39Q53GS9 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
USP39Q53GS9 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
USP39Q53GS9 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
USP39Q53GS9 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
USP39Q53GS9 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
USP39Q53GS9 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
USP39Q53GS9 AC012617.1-204ENST00000586340 2305 ntBASIC14.26□□□□□ -0.13
USP39Q53GS9 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC14.26□□□□□ -0.13
USP39Q53GS9 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
USP39Q53GS9 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
USP39Q53GS9 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
USP39Q53GS9 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
USP39Q53GS9 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
USP39Q53GS9 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC14.25□□□□□ -0.13
USP39Q53GS9 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
USP39Q53GS9 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
USP39Q53GS9 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
USP39Q53GS9 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC14.25□□□□□ -0.13
USP39Q53GS9 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC14.25□□□□□ -0.13
USP39Q53GS9 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
USP39Q53GS9 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
USP39Q53GS9 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
USP39Q53GS9 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
USP39Q53GS9 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC14.25□□□□□ -0.13
USP39Q53GS9 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
USP39Q53GS9 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
USP39Q53GS9 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC14.25□□□□□ -0.13
USP39Q53GS9 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
USP39Q53GS9 AL359881.3-201ENST00000602640 1721 ntBASIC14.25□□□□□ -0.13
USP39Q53GS9 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
USP39Q53GS9 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
USP39Q53GS9 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms