Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 FXNP2-201ENST00000411625 547 ntBASIC15.69■□□□□ 0.1
CIITAP33076 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC15.69■□□□□ 0.1
CIITAP33076 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC15.69■□□□□ 0.1
CIITAP33076 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC15.69■□□□□ 0.1
CIITAP33076 LYPLA2P1-203ENST00000447689 696 ntBASIC15.69■□□□□ 0.1
CIITAP33076 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC15.69■□□□□ 0.1
CIITAP33076 RN7SKP155-201ENST00000516031 288 ntBASIC15.69■□□□□ 0.1
CIITAP33076 RNA5SP406-201ENST00000516106 112 ntBASIC15.69■□□□□ 0.1
CIITAP33076 JPT2-214ENST00000569765 782 ntTSL 2 BASIC15.69■□□□□ 0.1
CIITAP33076 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC15.69■□□□□ 0.1
CIITAP33076 NT5C-204ENST00000578337 582 ntTSL 2 BASIC15.69■□□□□ 0.1
CIITAP33076 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
CIITAP33076 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
CIITAP33076 C1R-201ENST00000535233 2211 ntTSL 2 BASIC15.69■□□□□ 0.1
CIITAP33076 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC15.69■□□□□ 0.1
CIITAP33076 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC15.69■□□□□ 0.1
CIITAP33076 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CIITAP33076 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CIITAP33076 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
CIITAP33076 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
CIITAP33076 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CIITAP33076 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC15.69■□□□□ 0.1
CIITAP33076 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CIITAP33076 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
CIITAP33076 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC15.69■□□□□ 0.1
CIITAP33076 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CIITAP33076 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
CIITAP33076 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC15.69■□□□□ 0.1
CIITAP33076 AC104581.4-201ENST00000623126 3052 ntBASIC15.69■□□□□ 0.1
CIITAP33076 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
CIITAP33076 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CIITAP33076 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CIITAP33076 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
CIITAP33076 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
CIITAP33076 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC15.68■□□□□ 0.1
CIITAP33076 AC020763.3-201ENST00000625095 2904 ntBASIC15.68■□□□□ 0.1
CIITAP33076 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CIITAP33076 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC15.68■□□□□ 0.1
CIITAP33076 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CIITAP33076 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CIITAP33076 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC15.68■□□□□ 0.1
CIITAP33076 AC067750.1-201ENST00000608826 6545 ntBASIC15.68■□□□□ 0.1
CIITAP33076 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CIITAP33076 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC15.68■□□□□ 0.1
CIITAP33076 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CIITAP33076 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CIITAP33076 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CIITAP33076 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC15.68■□□□□ 0.1
CIITAP33076 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC15.68■□□□□ 0.1
CIITAP33076 AC093300.1-201ENST00000510368 1201 ntBASIC15.68■□□□□ 0.1
CIITAP33076 LINC02369-202ENST00000540745 801 ntTSL 5 BASIC15.68■□□□□ 0.1
CIITAP33076 ADSSL1-208ENST00000555674 520 ntTSL 3 BASIC15.68■□□□□ 0.1
CIITAP33076 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC15.68■□□□□ 0.1
CIITAP33076 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CIITAP33076 DBP-202ENST00000593500 712 ntTSL 2 BASIC15.68■□□□□ 0.1
CIITAP33076 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC15.68■□□□□ 0.1
CIITAP33076 MIR6858-201ENST00000620733 67 ntBASIC15.68■□□□□ 0.1
CIITAP33076 AC073911.3-201ENST00000624401 631 ntBASIC15.68■□□□□ 0.1
CIITAP33076 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC15.68■□□□□ 0.1
CIITAP33076 CICP4-201ENST00000447359 2812 ntBASIC15.68■□□□□ 0.1
CIITAP33076 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
CIITAP33076 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC15.68■□□□□ 0.1
CIITAP33076 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
CIITAP33076 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
CIITAP33076 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CIITAP33076 PRKACB-205ENST00000370688 1905 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CIITAP33076 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC15.68■□□□□ 0.1
CIITAP33076 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CIITAP33076 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CIITAP33076 STK3-218ENST00000617590 2485 ntTSL 5 BASIC15.68■□□□□ 0.1
CIITAP33076 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
CIITAP33076 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CIITAP33076 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
CIITAP33076 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CIITAP33076 SPDYA-202ENST00000379579 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CIITAP33076 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC15.67■□□□□ 0.1
CIITAP33076 IL9RP3-201ENST00000442856 1674 ntBASIC15.67■□□□□ 0.1
CIITAP33076 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CIITAP33076 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CIITAP33076 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CIITAP33076 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CIITAP33076 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CIITAP33076 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CIITAP33076 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC15.67■□□□□ 0.1
CIITAP33076 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
CIITAP33076 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
CIITAP33076 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CIITAP33076 HCRTR1-201ENST00000373705 1170 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CIITAP33076 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
CIITAP33076 AP001596.1-201ENST00000429340 781 ntTSL 5 BASIC15.67■□□□□ 0.1
CIITAP33076 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CIITAP33076 AC008267.1-201ENST00000474858 1069 ntBASIC15.67■□□□□ 0.1
CIITAP33076 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC15.67■□□□□ 0.1
CIITAP33076 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC15.67■□□□□ 0.1
CIITAP33076 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC15.67■□□□□ 0.1
CIITAP33076 SEPT14P19-201ENST00000587432 336 ntTSL 2 BASIC15.67■□□□□ 0.1
CIITAP33076 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC15.67■□□□□ 0.1
CIITAP33076 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CIITAP33076 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CIITAP33076 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms