Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC13.95□□□□□ -0.18
VCANP13611 IDH3A-207ENST00000558554 1595 ntTSL 2 BASIC13.95□□□□□ -0.18
VCANP13611 ROPN1B-201ENST00000251776 1026 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VCANP13611 BX072579.1-201ENST00000449453 344 ntTSL 3 BASIC13.95□□□□□ -0.18
VCANP13611 SYNPR-AS1-201ENST00000488201 558 ntTSL 5 BASIC13.95□□□□□ -0.18
VCANP13611 GAPDHP76-201ENST00000512278 976 ntBASIC13.95□□□□□ -0.18
VCANP13611 MRPL51-205ENST00000543164 814 ntTSL 2 BASIC13.95□□□□□ -0.18
VCANP13611 MRPL51-206ENST00000543703 441 ntTSL 3 BASIC13.95□□□□□ -0.18
VCANP13611 COPZ1-206ENST00000549043 1232 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
VCANP13611 SMIM22-201ENST00000586005 366 ntAPPRIS P4 TSL 3 BASIC13.95□□□□□ -0.18
VCANP13611 SARS2-211ENST00000598831 665 ntTSL 5 BASIC13.95□□□□□ -0.18
VCANP13611 Metazoa_SRP.82-201ENST00000611637 265 ntBASIC13.95□□□□□ -0.18
VCANP13611 NID2-208ENST00000617139 3827 ntTSL 5 BASIC13.95□□□□□ -0.18
VCANP13611 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VCANP13611 HAO1-201ENST00000378789 1777 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VCANP13611 CTRL-205ENST00000574481 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VCANP13611 CHIAP2-204ENST00000532686 1449 ntBASIC13.95□□□□□ -0.18
VCANP13611 AL512488.1-201ENST00000433544 1671 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
VCANP13611 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC13.95□□□□□ -0.18
VCANP13611 AC215219.1-201ENST00000400706 1817 ntBASIC13.95□□□□□ -0.18
VCANP13611 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
VCANP13611 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
VCANP13611 KRTAP4-6-201ENST00000345847 1055 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
VCANP13611 SNORA30.1-201ENST00000363193 129 ntBASIC13.95□□□□□ -0.18
VCANP13611 PRDX1-203ENST00000372079 609 ntTSL 3 BASIC13.95□□□□□ -0.18
VCANP13611 AL133517.1-201ENST00000413412 748 ntBASIC13.95□□□□□ -0.18
VCANP13611 PPP3CB-AS1-201ENST00000422977 930 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
VCANP13611 LINC01297-202ENST00000453395 624 ntTSL 5 BASIC13.95□□□□□ -0.18
VCANP13611 TSACC-206ENST00000466306 477 ntTSL 3 BASIC13.95□□□□□ -0.18
VCANP13611 TMEM255B-205ENST00000488362 694 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
VCANP13611 RN7SL733P-201ENST00000582253 329 ntBASIC13.95□□□□□ -0.18
VCANP13611 AC003070.1-201ENST00000592389 457 ntTSL 2 BASIC13.95□□□□□ -0.18
VCANP13611 RN7SL248P-201ENST00000615117 329 ntBASIC13.95□□□□□ -0.18
VCANP13611 RN7SL453P-201ENST00000620275 329 ntBASIC13.95□□□□□ -0.18
VCANP13611 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
VCANP13611 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
VCANP13611 SMARCA2-254ENST00000636903 2471 ntTSL 5 BASIC13.95□□□□□ -0.18
VCANP13611 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VCANP13611 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VCANP13611 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC13.95□□□□□ -0.18
VCANP13611 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
VCANP13611 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VCANP13611 E2F6P4-201ENST00000468625 514 ntBASIC13.94□□□□□ -0.18
VCANP13611 AC015909.2-201ENST00000523083 547 ntTSL 3 BASIC13.94□□□□□ -0.18
VCANP13611 AL589743.3-201ENST00000604121 517 ntBASIC13.94□□□□□ -0.18
VCANP13611 AC020763.2-201ENST00000623155 1255 ntBASIC13.94□□□□□ -0.18
VCANP13611 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
VCANP13611 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
VCANP13611 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC13.94□□□□□ -0.18
VCANP13611 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
VCANP13611 CYP2B6-202ENST00000593831 1426 ntTSL 2 BASIC13.94□□□□□ -0.18
VCANP13611 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
VCANP13611 PRAMEF25-201ENST00000614839 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VCANP13611 PRAMEF26-201ENST00000624207 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VCANP13611 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
VCANP13611 LIPC-204ENST00000433326 1484 ntTSL 2 BASIC13.94□□□□□ -0.18
VCANP13611 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC13.94□□□□□ -0.18
VCANP13611 FXYD2-201ENST00000260287 513 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VCANP13611 SERF2-210ENST00000409960 1032 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
VCANP13611 CD37-203ENST00000426897 1204 ntTSL 2 BASIC13.94□□□□□ -0.18
VCANP13611 AC044802.2-201ENST00000551187 434 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
VCANP13611 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VCANP13611 SNX14-201ENST00000314673 3486 ntAPPRIS P4 TSL 1 (best) BASIC13.94□□□□□ -0.18
VCANP13611 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
VCANP13611 AC092384.3-202ENST00000564646 2873 ntBASIC13.94□□□□□ -0.18
VCANP13611 BANP-201ENST00000286122 2368 ntTSL 5 BASIC13.94□□□□□ -0.18
VCANP13611 LINC01763-201ENST00000425185 1547 ntTSL 3 BASIC13.94□□□□□ -0.18
VCANP13611 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
VCANP13611 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.94□□□□□ -0.18
VCANP13611 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC13.94□□□□□ -0.18
VCANP13611 TNRC18P2-201ENST00000417666 2714 ntBASIC13.94□□□□□ -0.18
VCANP13611 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VCANP13611 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
VCANP13611 RHCE-203ENST00000346452 971 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
VCANP13611 AP000346.1-201ENST00000390329 1087 ntTSL 5 BASIC13.94□□□□□ -0.18
VCANP13611 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VCANP13611 LINC01128-201ENST00000415295 894 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
VCANP13611 TUSC8-201ENST00000432701 978 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
VCANP13611 AL139412.1-201ENST00000441085 523 ntTSL 2 BASIC13.94□□□□□ -0.18
VCANP13611 AC246680.1-201ENST00000444624 494 ntTSL 3 BASIC13.94□□□□□ -0.18
VCANP13611 OCIAD1-226ENST00000513391 1288 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
VCANP13611 AC109466.1-201ENST00000517508 804 ntTSL 4 BASIC13.94□□□□□ -0.18
VCANP13611 STMN4-203ENST00000519614 1273 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
VCANP13611 AC073578.1-201ENST00000535133 493 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
VCANP13611 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC13.94□□□□□ -0.18
VCANP13611 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VCANP13611 AC006547.1-207ENST00000601746 930 ntTSL 5 BASIC13.94□□□□□ -0.18
VCANP13611 AL512631.1-201ENST00000604086 840 ntBASIC13.94□□□□□ -0.18
VCANP13611 AL596094.1-201ENST00000608273 276 ntTSL 2 BASIC13.94□□□□□ -0.18
VCANP13611 AC006547.1-210ENST00000609644 589 ntTSL 5 BASIC13.94□□□□□ -0.18
VCANP13611 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
VCANP13611 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VCANP13611 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
VCANP13611 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
VCANP13611 ZNF793-205ENST00000587143 1488 ntAPPRIS P1 TSL 4 BASIC13.93□□□□□ -0.18
VCANP13611 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
VCANP13611 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
VCANP13611 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
VCANP13611 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC13.93□□□□□ -0.18
VCANP13611 APOC3-201ENST00000227667 550 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms