Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
COL6A3P12111 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
COL6A3P12111 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
COL6A3P12111 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC13.89□□□□□ -0.19
COL6A3P12111 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC13.89□□□□□ -0.19
COL6A3P12111 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC13.89□□□□□ -0.19
COL6A3P12111 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A3P12111 ZSCAN5DP-201ENST00000600684 1488 ntBASIC13.89□□□□□ -0.19
COL6A3P12111 PSMC1P1-201ENST00000478110 1320 ntBASIC13.89□□□□□ -0.19
COL6A3P12111 CREB3L4-203ENST00000368601 950 ntTSL 2 BASIC13.89□□□□□ -0.19
COL6A3P12111 AC245884.7-201ENST00000514037 356 ntBASIC13.89□□□□□ -0.19
COL6A3P12111 AC104371.1-201ENST00000522077 797 ntBASIC13.89□□□□□ -0.19
COL6A3P12111 MIR4294-201ENST00000584548 76 ntBASIC13.89□□□□□ -0.19
COL6A3P12111 IGKV1D-13-201ENST00000611391 376 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
COL6A3P12111 AC117500.5-201ENST00000623233 527 ntBASIC13.89□□□□□ -0.19
COL6A3P12111 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A3P12111 ZNF772-209ENST00000615214 1506 ntTSL 5 BASIC13.89□□□□□ -0.19
COL6A3P12111 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A3P12111 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A3P12111 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A3P12111 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A3P12111 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
COL6A3P12111 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A3P12111 RCC2P5-201ENST00000492126 1487 ntBASIC13.89□□□□□ -0.19
COL6A3P12111 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A3P12111 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A3P12111 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC13.89□□□□□ -0.19
COL6A3P12111 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC13.89□□□□□ -0.19
COL6A3P12111 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
COL6A3P12111 TBC1D8B-202ENST00000310452 2589 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A3P12111 RCC2P7-201ENST00000405832 1264 ntBASIC13.89□□□□□ -0.19
COL6A3P12111 SNORA50D-201ENST00000408059 134 ntBASIC13.89□□□□□ -0.19
COL6A3P12111 LINC01287-203ENST00000454441 1007 ntTSL 5 BASIC13.89□□□□□ -0.19
COL6A3P12111 RN7SL756P-201ENST00000488739 268 ntBASIC13.89□□□□□ -0.19
COL6A3P12111 RPL12-205ENST00000536368 499 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A3P12111 MAP3K14-AS1-207ENST00000588698 460 ntTSL 4 BASIC13.89□□□□□ -0.19
COL6A3P12111 AC003005.2-201ENST00000595422 539 ntTSL 4 BASIC13.89□□□□□ -0.19
COL6A3P12111 PRSS2-206ENST00000633969 852 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A3P12111 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A3P12111 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A3P12111 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A3P12111 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC13.88□□□□□ -0.19
COL6A3P12111 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
COL6A3P12111 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A3P12111 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC13.88□□□□□ -0.19
COL6A3P12111 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC13.88□□□□□ -0.19
COL6A3P12111 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC13.88□□□□□ -0.19
COL6A3P12111 EFNA1-201ENST00000368406 1444 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A3P12111 MTHFR-210ENST00000641407 2387 ntBASIC13.88□□□□□ -0.19
COL6A3P12111 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A3P12111 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A3P12111 LINC00552-201ENST00000625151 2579 ntBASIC13.88□□□□□ -0.19
COL6A3P12111 OR2V2-201ENST00000328275 948 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
COL6A3P12111 KRTAP19-1-201ENST00000390689 646 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
COL6A3P12111 AL356653.1-201ENST00000402743 360 ntBASIC13.88□□□□□ -0.19
COL6A3P12111 HNRNPA1P33-201ENST00000421426 561 ntBASIC13.88□□□□□ -0.19
COL6A3P12111 APOBEC3H-203ENST00000421988 592 ntTSL 5 BASIC13.88□□□□□ -0.19
COL6A3P12111 AL355298.1-201ENST00000425391 180 ntBASIC13.88□□□□□ -0.19
COL6A3P12111 CDCA4P3-201ENST00000442572 689 ntBASIC13.88□□□□□ -0.19
COL6A3P12111 IQCJ-202ENST00000451172 885 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A3P12111 AADAC-202ENST00000488869 719 ntTSL 2 BASIC13.88□□□□□ -0.19
COL6A3P12111 AC093871.1-201ENST00000503815 534 ntTSL 2 BASIC13.88□□□□□ -0.19
COL6A3P12111 AC097634.2-201ENST00000615819 604 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A3P12111 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC13.88□□□□□ -0.19
COL6A3P12111 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A3P12111 ASGR2-201ENST00000254850 1396 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A3P12111 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A3P12111 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC13.88□□□□□ -0.19
COL6A3P12111 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC13.88□□□□□ -0.19
COL6A3P12111 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC13.88□□□□□ -0.19
COL6A3P12111 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC13.88□□□□□ -0.19
COL6A3P12111 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A3P12111 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC13.88□□□□□ -0.19
COL6A3P12111 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC13.88□□□□□ -0.19
COL6A3P12111 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
COL6A3P12111 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
COL6A3P12111 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A3P12111 CDY6P-201ENST00000413320 1266 ntBASIC13.88□□□□□ -0.19
COL6A3P12111 AC010136.1-201ENST00000450996 568 ntTSL 4 BASIC13.88□□□□□ -0.19
COL6A3P12111 WASH6P-207ENST00000476066 720 ntTSL 5 BASIC13.88□□□□□ -0.19
COL6A3P12111 RPL30P11-202ENST00000509114 358 ntTSL 3 BASIC13.88□□□□□ -0.19
COL6A3P12111 AC003072.1-201ENST00000510957 612 ntBASIC13.88□□□□□ -0.19
COL6A3P12111 AC010542.3-202ENST00000561728 701 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
COL6A3P12111 AC012593.1-216ENST00000626183 444 ntTSL 5 BASIC13.88□□□□□ -0.19
COL6A3P12111 NRADDP-202ENST00000641269 1585 ntBASIC13.88□□□□□ -0.19
COL6A3P12111 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC13.88□□□□□ -0.19
COL6A3P12111 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A3P12111 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A3P12111 NDEL1-203ENST00000402554 1858 ntTSL 5 BASIC13.88□□□□□ -0.19
COL6A3P12111 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC13.88□□□□□ -0.19
COL6A3P12111 AC126365.1-201ENST00000578585 1514 ntBASIC13.88□□□□□ -0.19
COL6A3P12111 STAMBP-204ENST00000409707 1649 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
COL6A3P12111 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC13.88□□□□□ -0.19
COL6A3P12111 VRK3-202ENST00000377011 1749 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
COL6A3P12111 SERPINA13P-201ENST00000469935 1718 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A3P12111 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC13.88□□□□□ -0.19
COL6A3P12111 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A3P12111 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A3P12111 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A3P12111 COCH-203ENST00000460581 2688 ntTSL 2 BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms