Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
TPM1P09493 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TPM1P09493 RGS3-205ENST00000374134 2862 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TPM1P09493 FAM157A-203ENST00000634862 6083 ntTSL 5 BASIC15.55■□□□□ 0.08
TPM1P09493 ZNF180-201ENST00000221327 4335 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
TPM1P09493 PPT2-EGFL8-202ENST00000422437 4181 ntAPPRIS P5 TSL 5 BASIC15.55■□□□□ 0.08
TPM1P09493 MECOM-206ENST00000464456 5732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TPM1P09493 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC15.55■□□□□ 0.08
TPM1P09493 RRM2B-211ENST00000621845 3483 ntTSL 2 BASIC15.55■□□□□ 0.08
TPM1P09493 RAB42-201ENST00000373826 1950 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TPM1P09493 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC15.55■□□□□ 0.08
TPM1P09493 GOLGA8IP-201ENST00000340249 1899 ntTSL 2 BASIC15.54■□□□□ 0.08
TPM1P09493 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TPM1P09493 SMPDL3B-202ENST00000373894 1878 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
TPM1P09493 IL11RA-208ENST00000555003 3008 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
TPM1P09493 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
TPM1P09493 FAS-202ENST00000352159 1722 ntTSL 5 BASIC15.54■□□□□ 0.08
TPM1P09493 ATXN2L-205ENST00000395547 3981 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
TPM1P09493 MTMR3-201ENST00000323630 5866 ntTSL 5 BASIC15.54■□□□□ 0.08
TPM1P09493 FAM95B1-212ENST00000592873 4692 ntBASIC15.54■□□□□ 0.08
TPM1P09493 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TPM1P09493 TMBIM7P-202ENST00000641474 1516 ntBASIC15.54■□□□□ 0.08
TPM1P09493 GUCY1B3-205ENST00000505764 2456 ntTSL 2 BASIC15.54■□□□□ 0.08
TPM1P09493 AC007952.5-201ENST00000572818 1486 ntBASIC15.54■□□□□ 0.08
TPM1P09493 SLC4A2-204ENST00000461735 4387 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TPM1P09493 ZNF426-204ENST00000593003 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
TPM1P09493 PIK3R5-220ENST00000623421 4318 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TPM1P09493 ADCY7-201ENST00000254235 6138 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TPM1P09493 CCBE1-201ENST00000398179 5979 ntTSL 5 BASIC15.54■□□□□ 0.08
TPM1P09493 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TPM1P09493 AC127496.1-201ENST00000576234 3133 ntTSL 2 BASIC15.54■□□□□ 0.08
TPM1P09493 DYSF-203ENST00000409366 6606 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
TPM1P09493 DYSF-205ENST00000409651 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
TPM1P09493 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TPM1P09493 MIR326-201ENST00000362220 95 ntBASIC15.54■□□□□ 0.08
TPM1P09493 PIN1P1-201ENST00000412108 996 ntBASIC15.54■□□□□ 0.08
TPM1P09493 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC15.54■□□□□ 0.08
TPM1P09493 CTCFL-208ENST00000432255 2955 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TPM1P09493 ST13P19-201ENST00000442505 1124 ntBASIC15.54■□□□□ 0.08
TPM1P09493 AL355994.2-201ENST00000447882 704 ntBASIC15.54■□□□□ 0.08
TPM1P09493 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TPM1P09493 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC15.54■□□□□ 0.08
TPM1P09493 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC15.54■□□□□ 0.08
TPM1P09493 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC15.54■□□□□ 0.08
TPM1P09493 AP001889.1-201ENST00000525414 633 ntBASIC15.54■□□□□ 0.08
TPM1P09493 AC140658.4-201ENST00000561990 352 ntBASIC15.54■□□□□ 0.08
TPM1P09493 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TPM1P09493 AC073862.5-201ENST00000624129 2027 ntBASIC15.54■□□□□ 0.08
TPM1P09493 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
TPM1P09493 C5orf56-206ENST00000612967 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
TPM1P09493 NTN4-203ENST00000538383 1971 ntTSL 2 BASIC15.54■□□□□ 0.08
TPM1P09493 GALNT7-201ENST00000265000 4307 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TPM1P09493 CCT3-204ENST00000368259 1815 ntTSL 2 BASIC15.54■□□□□ 0.08
TPM1P09493 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
TPM1P09493 SCN1B-202ENST00000415950 4537 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TPM1P09493 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
TPM1P09493 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
TPM1P09493 SALL4P6-201ENST00000429385 1691 ntBASIC15.54■□□□□ 0.08
TPM1P09493 GPR12-202ENST00000405846 4850 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TPM1P09493 SMPDL3B-206ENST00000549094 1611 ntTSL 5 BASIC15.54■□□□□ 0.08
TPM1P09493 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TPM1P09493 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC15.53■□□□□ 0.08
TPM1P09493 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TPM1P09493 MTSS1-201ENST00000325064 2777 ntTSL 2 BASIC15.53■□□□□ 0.08
TPM1P09493 SNRK-201ENST00000296088 5183 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TPM1P09493 RAB37-205ENST00000392614 2704 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
TPM1P09493 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TPM1P09493 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TPM1P09493 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TPM1P09493 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TPM1P09493 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC15.53■□□□□ 0.08
TPM1P09493 ZIK1-204ENST00000597850 4181 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
TPM1P09493 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TPM1P09493 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TPM1P09493 ZNF283-209ENST00000618787 5713 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
TPM1P09493 ATP2C2-AS1-201ENST00000565700 2998 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TPM1P09493 HJURP-207ENST00000441687 2934 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
TPM1P09493 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TPM1P09493 AL008718.2-201ENST00000609206 1313 ntBASIC15.53■□□□□ 0.08
TPM1P09493 VWA5B1-201ENST00000289815 4475 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
TPM1P09493 KCNJ10-201ENST00000368089 5528 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TPM1P09493 PPP1R8-202ENST00000311772 2344 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TPM1P09493 AC005229.1-201ENST00000392885 409 ntBASIC15.53■□□□□ 0.08
TPM1P09493 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TPM1P09493 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
TPM1P09493 GPR35-205ENST00000438013 3821 ntAPPRIS P3 BASIC15.53■□□□□ 0.08
TPM1P09493 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TPM1P09493 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC15.53■□□□□ 0.08
TPM1P09493 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TPM1P09493 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC15.53■□□□□ 0.08
TPM1P09493 GNRHR2-203ENST00000581100 1187 ntBASIC15.53■□□□□ 0.08
TPM1P09493 AC073413.1-201ENST00000603927 732 ntBASIC15.53■□□□□ 0.08
TPM1P09493 AL591471.1-201ENST00000621855 229 ntBASIC15.53■□□□□ 0.08
TPM1P09493 SLC7A8-205ENST00000453702 1752 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TPM1P09493 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC15.53■□□□□ 0.08
TPM1P09493 VENTXP1-201ENST00000569334 2716 ntBASIC15.53■□□□□ 0.08
TPM1P09493 MAN2B2-201ENST00000285599 5143 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TPM1P09493 TJAP1-204ENST00000372449 2695 ntTSL 5 BASIC15.53■□□□□ 0.08
TPM1P09493 PHF20-203ENST00000374012 5922 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TPM1P09493 TRAPPC9-201ENST00000389328 4474 ntTSL 2 BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms