Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 MIR1202-201ENST00000408529 83 ntBASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 YBX1P6-201ENST00000442962 1002 ntBASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 PFN2-215ENST00000497148 743 ntTSL 4 BASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 DUX4L46-201ENST00000566845 751 ntBASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 ARL16-210ENST00000574938 751 ntTSL 2 BASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 MIR6720-201ENST00000611664 98 ntBASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 MIR6787-201ENST00000616675 61 ntBASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 SUN2-201ENST00000405018 4022 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 AC061965.1-201ENST00000560524 1465 ntBASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 AC007952.5-201ENST00000572818 1486 ntBASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 GOLGA8IP-201ENST00000340249 1899 ntTSL 2 BASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 ELN-211ENST00000414324 3139 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 LINC01019-201ENST00000505443 3199 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC13.2□□□□□ -0.3
AMBRA1Q9C0C7 SHC1-202ENST00000368445 3472 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 AL023775.1-201ENST00000454907 1746 ntBASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 NCS1-201ENST00000372398 4991 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 ZNF792-201ENST00000404801 3888 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 RCC2P1-201ENST00000452257 1476 ntBASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 AC092506.1-202ENST00000401022 528 ntBASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 HMGA1P1-201ENST00000415560 1062 ntBASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 FAM21FP-201ENST00000426241 1131 ntBASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 RBM8B-201ENST00000555532 525 ntBASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 AC103810.3-201ENST00000583567 96 ntBASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 SMPDL3B-206ENST00000549094 1611 ntTSL 5 BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 AC015819.3-201ENST00000624305 2674 ntBASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 LILRB1-203ENST00000396317 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 OS9-203ENST00000389142 2457 ntTSL 5 BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 ZBTB42-201ENST00000342537 3800 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 NHEJ1-201ENST00000356853 2094 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 ADAM8-201ENST00000415217 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 PRKCH-201ENST00000332981 3582 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 DHX30-215ENST00000619982 3574 ntAPPRIS ALT1 TSL 5 BASIC13.19□□□□□ -0.3
AMBRA1Q9C0C7 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
AMBRA1Q9C0C7 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
AMBRA1Q9C0C7 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
AMBRA1Q9C0C7 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC13.18□□□□□ -0.3
AMBRA1Q9C0C7 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
AMBRA1Q9C0C7 HOXA7-201ENST00000242159 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
AMBRA1Q9C0C7 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
AMBRA1Q9C0C7 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
AMBRA1Q9C0C7 SALL4P6-201ENST00000429385 1691 ntBASIC13.18□□□□□ -0.3
AMBRA1Q9C0C7 AC244394.1-201ENST00000435000 1665 ntBASIC13.18□□□□□ -0.3
AMBRA1Q9C0C7 TUBB1P2-201ENST00000422712 1306 ntBASIC13.18□□□□□ -0.3
AMBRA1Q9C0C7 TUBB1P1-201ENST00000503144 1300 ntBASIC13.18□□□□□ -0.3
AMBRA1Q9C0C7 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
AMBRA1Q9C0C7 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
AMBRA1Q9C0C7 LSM14A-201ENST00000433627 3424 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
AMBRA1Q9C0C7 EFHC1-221ENST00000636489 2421 ntTSL 5 BASIC13.18□□□□□ -0.3
AMBRA1Q9C0C7 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
AMBRA1Q9C0C7 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC13.18□□□□□ -0.3
AMBRA1Q9C0C7 ROPN1-206ENST00000479867 2056 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
AMBRA1Q9C0C7 ROPN1B-202ENST00000504401 2050 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
AMBRA1Q9C0C7 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC13.18□□□□□ -0.3
AMBRA1Q9C0C7 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms