Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ADAMTSL2-202ENST00000393060 3725 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 USP20-201ENST00000315480 4458 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 PRAMEF25-201ENST00000614839 1863 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 PRAMEF26-201ENST00000624207 1863 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 NLRP2-204ENST00000391721 3420 ntAPPRIS ALT2 TSL 2 BASIC11.76□□□□□ -0.53
HOXA1P49639 APPBP2-201ENST00000083182 6478 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
HOXA1P49639 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
HOXA1P49639 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC11.76□□□□□ -0.53
HOXA1P49639 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC11.76□□□□□ -0.53
HOXA1P49639 WDR81-205ENST00000437219 3184 ntTSL 2 BASIC11.76□□□□□ -0.53
HOXA1P49639 ESYT3-202ENST00000389567 4407 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 ARHGEF2-206ENST00000462460 4438 ntTSL 5 BASIC11.76□□□□□ -0.53
HOXA1P49639 FES-201ENST00000328850 2829 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC11.76□□□□□ -0.53
HOXA1P49639 BDNF-208ENST00000418212 4125 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 TBC1D14-208ENST00000451522 4149 ntAPPRIS ALT1 TSL 5 BASIC11.76□□□□□ -0.53
HOXA1P49639 NT5C3AP1-202ENST00000441170 1663 ntBASIC11.76□□□□□ -0.53
HOXA1P49639 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC11.76□□□□□ -0.53
HOXA1P49639 QSOX1-202ENST00000367602 9311 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
HOXA1P49639 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC11.76□□□□□ -0.53
HOXA1P49639 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC11.76□□□□□ -0.53
HOXA1P49639 MRPS18AP1-201ENST00000414458 589 ntBASIC11.76□□□□□ -0.53
HOXA1P49639 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
HOXA1P49639 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC11.76□□□□□ -0.53
HOXA1P49639 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC11.76□□□□□ -0.53
HOXA1P49639 AP001063.1-201ENST00000568332 529 ntBASIC11.76□□□□□ -0.53
HOXA1P49639 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC11.76□□□□□ -0.53
HOXA1P49639 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC11.76□□□□□ -0.53
HOXA1P49639 ATF5-205ENST00000600336 682 ntTSL 2 BASIC11.76□□□□□ -0.53
HOXA1P49639 AC006538.3-201ENST00000612495 578 ntBASIC11.76□□□□□ -0.53
HOXA1P49639 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 BANK1-202ENST00000428908 3044 ntTSL 5 BASIC11.76□□□□□ -0.53
HOXA1P49639 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC11.76□□□□□ -0.53
HOXA1P49639 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
HOXA1P49639 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
HOXA1P49639 ZNF236-202ENST00000320610 7124 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 NUP62-208ENST00000596217 3590 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
HOXA1P49639 PHF20-203ENST00000374012 5922 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 DYNC1I1-202ENST00000359388 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 SEC31A-205ENST00000395310 4259 ntAPPRIS P4 TSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC11.76□□□□□ -0.53
HOXA1P49639 AL132642.2-201ENST00000623423 1998 ntBASIC11.76□□□□□ -0.53
HOXA1P49639 NLRP2-201ENST00000263437 3496 ntAPPRIS ALT2 TSL 2 BASIC11.76□□□□□ -0.53
HOXA1P49639 WNT9A-201ENST00000272164 3971 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 IKZF4-203ENST00000547167 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HOXA1P49639 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
HOXA1P49639 ENG-201ENST00000344849 3059 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
HOXA1P49639 MCM7-213ENST00000621318 3084 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HOXA1P49639 PCDHB2-201ENST00000194155 4126 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
HOXA1P49639 NCBP1-202ENST00000375147 5178 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HOXA1P49639 BTNL8-202ENST00000340184 2071 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HOXA1P49639 CLU-202ENST00000405140 2098 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HOXA1P49639 AL021155.1-201ENST00000438808 2637 ntBASIC11.75□□□□□ -0.53
HOXA1P49639 RRBP1-203ENST00000377807 3792 ntAPPRIS P2 TSL 5 BASIC11.75□□□□□ -0.53
HOXA1P49639 KRT33B-201ENST00000251646 1607 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HOXA1P49639 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC11.75□□□□□ -0.53
HOXA1P49639 ARFGEF1-201ENST00000262215 7225 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HOXA1P49639 PLSCR1-201ENST00000342435 2233 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
HOXA1P49639 MTMR3-201ENST00000323630 5866 ntTSL 5 BASIC11.75□□□□□ -0.53
HOXA1P49639 AC125807.2-201ENST00000513358 3514 ntBASIC11.75□□□□□ -0.53
HOXA1P49639 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC11.75□□□□□ -0.53
HOXA1P49639 VPS13A-204ENST00000376634 10269 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
HOXA1P49639 SMIM21-202ENST00000579022 1834 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
HOXA1P49639 DHX30-206ENST00000446256 3660 ntAPPRIS P2 TSL 2 BASIC11.75□□□□□ -0.53
HOXA1P49639 AC087164.2-201ENST00000624514 3130 ntBASIC11.75□□□□□ -0.53
HOXA1P49639 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HOXA1P49639 RN7SKP230-201ENST00000365642 335 ntBASIC11.75□□□□□ -0.53
HOXA1P49639 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC11.75□□□□□ -0.53
HOXA1P49639 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HOXA1P49639 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC11.75□□□□□ -0.53
HOXA1P49639 DFFBP1-201ENST00000433250 979 ntBASIC11.75□□□□□ -0.53
HOXA1P49639 AL162726.2-201ENST00000438986 1017 ntBASIC11.75□□□□□ -0.53
HOXA1P49639 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC11.75□□□□□ -0.53
HOXA1P49639 AC245100.3-201ENST00000441281 285 ntBASIC11.75□□□□□ -0.53
HOXA1P49639 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC11.75□□□□□ -0.53
HOXA1P49639 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HOXA1P49639 HNRNPA1P13-201ENST00000510646 963 ntBASIC11.75□□□□□ -0.53
HOXA1P49639 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC11.75□□□□□ -0.53
HOXA1P49639 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HOXA1P49639 ENPP7P5-201ENST00000541031 1031 ntBASIC11.75□□□□□ -0.53
HOXA1P49639 KSR1-207ENST00000578981 748 ntTSL 4 BASIC11.75□□□□□ -0.53
HOXA1P49639 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC11.75□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms