Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 LINC00682-202ENST00000499082 1384 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CUX1P39880 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
CUX1P39880 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
CUX1P39880 GAPDH-205ENST00000396861 1348 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
CUX1P39880 CDCA7L-201ENST00000356195 2915 ntTSL 2 BASIC22.57■■□□□ 1.2
CUX1P39880 CD3G-202ENST00000392883 1179 ntTSL 5 BASIC22.57■■□□□ 1.2
CUX1P39880 TEDDM2P-201ENST00000414169 786 ntBASIC22.57■■□□□ 1.2
CUX1P39880 BX088651.3-201ENST00000418155 352 ntBASIC22.57■■□□□ 1.2
CUX1P39880 GOLGA2P10-201ENST00000550961 817 ntBASIC22.57■■□□□ 1.2
CUX1P39880 AC140912.1-202ENST00000561802 194 ntTSL 3 BASIC22.57■■□□□ 1.2
CUX1P39880 SMIM28-201ENST00000573100 855 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
CUX1P39880 MIR4539-201ENST00000579784 60 ntBASIC22.57■■□□□ 1.2
CUX1P39880 HNRNPA1P11-201ENST00000580106 956 ntBASIC22.57■■□□□ 1.2
CUX1P39880 BX510359.7-201ENST00000619819 630 ntBASIC22.57■■□□□ 1.2
CUX1P39880 TRIP12-205ENST00000409677 1507 ntTSL 2 BASIC22.56■■□□□ 1.2
CUX1P39880 FAM86C1-202ENST00000359244 2110 ntAPPRIS ALT2 TSL 2 BASIC22.56■■□□□ 1.2
CUX1P39880 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC22.56■■□□□ 1.2
CUX1P39880 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CUX1P39880 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
CUX1P39880 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CUX1P39880 ANKDD1A-207ENST00000496660 1477 ntTSL 2 BASIC22.56■■□□□ 1.2
CUX1P39880 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CUX1P39880 HOXA1-202ENST00000355633 2016 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CUX1P39880 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
CUX1P39880 RECQL5-218ENST00000584999 1922 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CUX1P39880 TBC1D8B-202ENST00000310452 2589 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CUX1P39880 AKNA-203ENST00000312033 3334 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CUX1P39880 U3.41-201ENST00000408711 219 ntBASIC22.56■■□□□ 1.2
CUX1P39880 AL590399.1-204ENST00000430302 781 ntTSL 5 BASIC22.56■■□□□ 1.2
CUX1P39880 AC114781.1-201ENST00000450559 1028 ntBASIC22.56■■□□□ 1.2
CUX1P39880 WASIR2-201ENST00000527434 1054 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CUX1P39880 LINC01398-202ENST00000634819 1292 ntTSL 5 BASIC22.56■■□□□ 1.2
CUX1P39880 ALDOA-229ENST00000636698 420 ntTSL 3 BASIC22.56■■□□□ 1.2
CUX1P39880 GPN1-211ENST00000610189 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
CUX1P39880 FAM238C-202ENST00000639963 1787 ntTSL 2 BASIC22.56■■□□□ 1.2
CUX1P39880 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CUX1P39880 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CUX1P39880 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC22.56■■□□□ 1.2
CUX1P39880 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
CUX1P39880 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
CUX1P39880 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
CUX1P39880 TCP1-215ENST00000544255 1403 ntTSL 5 BASIC22.55■■□□□ 1.2
CUX1P39880 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CUX1P39880 HNRNPL-210ENST00000600873 1633 ntTSL 5 BASIC22.55■■□□□ 1.2
CUX1P39880 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
CUX1P39880 AC012158.1-201ENST00000535684 1366 ntTSL 2 BASIC22.55■■□□□ 1.2
CUX1P39880 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC22.55■■□□□ 1.2
CUX1P39880 ATF3-202ENST00000341491 2033 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CUX1P39880 AC091807.1-201ENST00000418838 1544 ntBASIC22.55■■□□□ 1.2
CUX1P39880 MB-204ENST00000401702 1043 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CUX1P39880 RNA5SP407-201ENST00000410275 110 ntBASIC22.55■■□□□ 1.2
CUX1P39880 RPSAP61-201ENST00000412542 878 ntBASIC22.55■■□□□ 1.2
CUX1P39880 AC064853.1-201ENST00000413096 540 ntTSL 4 BASIC22.55■■□□□ 1.2
CUX1P39880 AL358876.2-201ENST00000424689 477 ntTSL 3 BASIC22.55■■□□□ 1.2
CUX1P39880 RN7SL2-201ENST00000490232 300 ntBASIC22.55■■□□□ 1.2
CUX1P39880 H1FOO-202ENST00000503977 881 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CUX1P39880 AC099343.1-201ENST00000513481 609 ntBASIC22.55■■□□□ 1.2
CUX1P39880 SLC25A51P3-201ENST00000521814 889 ntBASIC22.55■■□□□ 1.2
CUX1P39880 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC22.55■■□□□ 1.2
CUX1P39880 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC22.55■■□□□ 1.2
CUX1P39880 MIR4526-201ENST00000583168 87 ntBASIC22.55■■□□□ 1.2
CUX1P39880 RN7SL4P-201ENST00000584058 295 ntBASIC22.55■■□□□ 1.2
CUX1P39880 GLB1-203ENST00000399402 2512 ntAPPRIS ALT2 TSL 2 BASIC22.55■■□□□ 1.2
CUX1P39880 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
CUX1P39880 SLC26A5-203ENST00000354356 2686 ntAPPRIS ALT1 TSL 5 BASIC22.55■■□□□ 1.2
CUX1P39880 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CUX1P39880 AL137077.2-201ENST00000635124 1608 ntBASIC22.55■■□□□ 1.2
CUX1P39880 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
CUX1P39880 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC22.55■■□□□ 1.2
CUX1P39880 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC22.55■■□□□ 1.2
CUX1P39880 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CUX1P39880 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CUX1P39880 LINC01137-201ENST00000424989 1395 ntTSL 2 BASIC22.54■■□□□ 1.2
CUX1P39880 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
CUX1P39880 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CUX1P39880 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
CUX1P39880 LINC00337-201ENST00000429480 1302 ntTSL 2 BASIC22.54■■□□□ 1.2
CUX1P39880 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CUX1P39880 PXK-210ENST00000479241 2817 ntTSL 2 BASIC22.54■■□□□ 1.2
CUX1P39880 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CUX1P39880 SLIRP-201ENST00000238688 394 ntAPPRIS P3 TSL 2 BASIC22.54■■□□□ 1.2
CUX1P39880 SCGB1C1-201ENST00000342878 431 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CUX1P39880 AC245128.1-201ENST00000400864 1294 ntTSL 5 BASIC22.54■■□□□ 1.2
CUX1P39880 RPS7-202ENST00000403564 764 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
CUX1P39880 HMGN1P4-201ENST00000419500 290 ntBASIC22.54■■□□□ 1.2
CUX1P39880 RN7SL76P-201ENST00000482435 289 ntBASIC22.54■■□□□ 1.2
CUX1P39880 AC009118.3-201ENST00000622896 873 ntBASIC22.54■■□□□ 1.2
CUX1P39880 AC005609.1-201ENST00000625195 617 ntTSL 5 BASIC22.54■■□□□ 1.2
CUX1P39880 AC007336.3-201ENST00000623886 2160 ntBASIC22.54■■□□□ 1.2
CUX1P39880 AC020741.1-201ENST00000381217 2079 ntTSL 2 BASIC22.54■■□□□ 1.2
CUX1P39880 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC22.54■■□□□ 1.2
CUX1P39880 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
CUX1P39880 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CUX1P39880 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CUX1P39880 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC22.54■■□□□ 1.2
CUX1P39880 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
CUX1P39880 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CUX1P39880 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CUX1P39880 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CUX1P39880 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC22.53■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms