Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 COG7-201ENST00000307149 2926 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 ZMAT4-202ENST00000315769 2250 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 RAB43-204ENST00000393307 4203 ntAPPRIS P1 TSL 4 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 FGFR2-212ENST00000369060 3244 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 AC092647.4-201ENST00000457211 535 ntBASIC8.63□□□□□ -1.03
LINC00643Q86TS7 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 AC004066.1-201ENST00000502488 802 ntBASIC8.63□□□□□ -1.03
LINC00643Q86TS7 NMU-205ENST00000511469 756 ntTSL 3 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 SUOX-214ENST00000551841 906 ntTSL 3 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 AL645728.2-201ENST00000641974 660 ntBASIC8.63□□□□□ -1.03
LINC00643Q86TS7 SLC9A8-202ENST00000417961 6309 ntTSL 2 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 SLC4A1AP-206ENST00000618046 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 ZBTB1-203ENST00000554015 2825 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 AL355482.1-201ENST00000411509 2463 ntTSL 2 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 IL17REL-202ENST00000389983 3668 ntAPPRIS P1 TSL 2 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 CCDC163-203ENST00000626657 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 PLEC-203ENST00000354589 14736 ntAPPRIS ALT2 TSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 SLAMF7-205ENST00000444090 2393 ntAPPRIS ALT2 TSL 2 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 SPDYA-202ENST00000379579 1759 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 NMT2-202ENST00000378165 2907 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 DNAJB14-205ENST00000442697 6075 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 SMARCAD1-204ENST00000457823 4649 ntAPPRIS ALT1 TSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 JPT2-206ENST00000562684 3185 ntTSL 2 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 NUP62-201ENST00000352066 2870 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 AC241952.1-201ENST00000612480 6897 ntBASIC8.63□□□□□ -1.03
LINC00643Q86TS7 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 GRM4-205ENST00000538487 4153 ntAPPRIS P1 TSL 2 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 STAT3-213ENST00000588969 2772 ntAPPRIS P4 TSL 1 (best) BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 DPH2-201ENST00000255108 2472 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 NTRK3-204ENST00000360948 3004 ntTSL 5 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 BGN-201ENST00000331595 2402 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 AC008609.1-202ENST00000501818 2686 ntTSL 2 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 SPDYE5-202ENST00000624640 2667 ntAPPRIS ALT2 TSL 5 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 EPHA5-201ENST00000273854 8266 ntAPPRIS P4 TSL 1 (best) BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 AC008555.2-202ENST00000601776 5302 ntTSL 2 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 LBHD1-204ENST00000431002 2915 ntAPPRIS ALT2 TSL 2 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 HNF4A-209ENST00000619550 4763 ntTSL 5 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 NUP214-203ENST00000451030 5021 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 ITGA10-201ENST00000369304 5269 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 PIGC-202ENST00000367728 2630 ntAPPRIS P1 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 LRSAM1-202ENST00000323301 3376 ntAPPRIS P1 TSL 2 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 CPEB1-213ENST00000617462 2068 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 CCDC36-204ENST00000452691 2315 ntAPPRIS P1 TSL 2 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 NFASC-201ENST00000339876 10333 ntAPPRIS ALT1 TSL 5 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 FUT6-203ENST00000524754 2598 ntAPPRIS P1 TSL 5 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 DDX27-206ENST00000618172 2567 ntAPPRIS ALT2 TSL 1 (best) BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 LINC01134-203ENST00000442673 3059 ntTSL 2 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 RBM17P1-201ENST00000453646 1190 ntBASIC8.62□□□□□ -1.03
LINC00643Q86TS7 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 C1QBPP2-201ENST00000528754 825 ntBASIC8.62□□□□□ -1.03
LINC00643Q86TS7 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 INO80C-210ENST00000590757 595 ntTSL 2 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 NKG7-205ENST00000600427 520 ntTSL 3 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 AC004706.3-202ENST00000621574 984 ntBASIC8.62□□□□□ -1.03
LINC00643Q86TS7 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC8.62□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms