Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC104423.1-201ENST00000591742 728 ntTSL 3 BASIC14□□□□□ -0.17
VCANP13611 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
VCANP13611 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC14□□□□□ -0.17
VCANP13611 AL022313.4-201ENST00000562756 2046 ntBASIC14□□□□□ -0.17
VCANP13611 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC14□□□□□ -0.17
VCANP13611 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC14□□□□□ -0.17
VCANP13611 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC14□□□□□ -0.17
VCANP13611 SNX18-202ENST00000343017 3140 ntBASIC14□□□□□ -0.17
VCANP13611 OR7E122P-201ENST00000383606 1017 ntBASIC14□□□□□ -0.17
VCANP13611 TXLNGY-202ENST00000407724 1000 ntTSL 3 BASIC14□□□□□ -0.17
VCANP13611 RNA5SP407-201ENST00000410275 110 ntBASIC14□□□□□ -0.17
VCANP13611 SLC25A3-212ENST00000549338 1285 ntAPPRIS ALT1 TSL 3 BASIC14□□□□□ -0.17
VCANP13611 Metazoa_SRP.85-201ENST00000610909 260 ntBASIC14□□□□□ -0.17
VCANP13611 MIR6880-201ENST00000622851 62 ntBASIC14□□□□□ -0.17
VCANP13611 SLC26A5-203ENST00000354356 2686 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
VCANP13611 DKFZP434H168-201ENST00000567381 1905 ntBASIC13.99□□□□□ -0.17
VCANP13611 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VCANP13611 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
VCANP13611 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC13.99□□□□□ -0.17
VCANP13611 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VCANP13611 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC13.99□□□□□ -0.17
VCANP13611 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC13.99□□□□□ -0.17
VCANP13611 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
VCANP13611 BNC2-207ENST00000471301 745 ntTSL 3 BASIC13.99□□□□□ -0.17
VCANP13611 KRT16P1-202ENST00000577750 679 ntTSL 3 BASIC13.99□□□□□ -0.17
VCANP13611 SRP9-205ENST00000626563 329 ntTSL 5 BASIC13.99□□□□□ -0.17
VCANP13611 NEK11-213ENST00000511262 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
VCANP13611 PPP1R32-201ENST00000338608 1535 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VCANP13611 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VCANP13611 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VCANP13611 AP000437.1-201ENST00000624057 2085 ntBASIC13.99□□□□□ -0.17
VCANP13611 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
VCANP13611 AC020658.6-201ENST00000623564 1870 ntBASIC13.99□□□□□ -0.17
VCANP13611 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
VCANP13611 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VCANP13611 OR52L1-201ENST00000332249 1094 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
VCANP13611 TMEM161B-AS1-204ENST00000504636 1039 ntTSL 2 BASIC13.99□□□□□ -0.17
VCANP13611 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC13.99□□□□□ -0.17
VCANP13611 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VCANP13611 B9D1-213ENST00000575403 928 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VCANP13611 DUSP22-206ENST00000603453 804 ntTSL 4 BASIC13.99□□□□□ -0.17
VCANP13611 HIST1H4K-201ENST00000611927 312 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
VCANP13611 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC13.99□□□□□ -0.17
VCANP13611 GYG2-204ENST00000381163 3393 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
VCANP13611 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC13.99□□□□□ -0.17
VCANP13611 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VCANP13611 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VCANP13611 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
VCANP13611 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC13.99□□□□□ -0.17
VCANP13611 DUT-208ENST00000559540 1441 ntTSL 2 BASIC13.99□□□□□ -0.17
VCANP13611 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VCANP13611 SERPINB8-209ENST00000636430 1719 ntTSL 5 BASIC13.99□□□□□ -0.17
VCANP13611 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC13.99□□□□□ -0.17
VCANP13611 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC13.99□□□□□ -0.17
VCANP13611 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VCANP13611 TRAF4-202ENST00000262396 683 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VCANP13611 OR4C6-201ENST00000314259 1020 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
VCANP13611 RNASE11-201ENST00000398008 872 ntAPPRIS P2 TSL 2 BASIC13.99□□□□□ -0.17
VCANP13611 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC13.99□□□□□ -0.17
VCANP13611 AL390726.1-201ENST00000451357 202 ntBASIC13.99□□□□□ -0.17
VCANP13611 NR2F2-AS1-210ENST00000561344 966 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VCANP13611 NFATC1-204ENST00000397790 3453 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
VCANP13611 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
VCANP13611 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC13.98□□□□□ -0.17
VCANP13611 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VCANP13611 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC13.98□□□□□ -0.17
VCANP13611 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
VCANP13611 FAM13B-203ENST00000425075 3098 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
VCANP13611 AC233724.7-201ENST00000511476 253 ntBASIC13.98□□□□□ -0.17
VCANP13611 AC097658.2-201ENST00000512715 624 ntTSL 3 BASIC13.98□□□□□ -0.17
VCANP13611 AC087190.3-201ENST00000562893 753 ntTSL 3 BASIC13.98□□□□□ -0.17
VCANP13611 AC002347.2-201ENST00000584139 171 ntTSL 3 BASIC13.98□□□□□ -0.17
VCANP13611 AC100788.1-201ENST00000591108 945 ntTSL 5 BASIC13.98□□□□□ -0.17
VCANP13611 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC13.98□□□□□ -0.17
VCANP13611 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
VCANP13611 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VCANP13611 HFE-204ENST00000349999 1704 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
VCANP13611 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
VCANP13611 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
VCANP13611 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VCANP13611 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC13.98□□□□□ -0.17
VCANP13611 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC13.98□□□□□ -0.17
VCANP13611 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
VCANP13611 SYNGR4-201ENST00000344846 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VCANP13611 TRBV22-1-201ENST00000424543 337 ntBASIC13.98□□□□□ -0.17
VCANP13611 KCCAT198-201ENST00000549251 549 ntTSL 4 BASIC13.98□□□□□ -0.17
VCANP13611 AL391152.1-202ENST00000551408 624 ntTSL 3 BASIC13.98□□□□□ -0.17
VCANP13611 AC109460.2-202ENST00000568057 573 ntTSL 3 BASIC13.98□□□□□ -0.17
VCANP13611 OPN1MW-201ENST00000595290 1242 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VCANP13611 AC244102.2-201ENST00000597568 955 ntBASIC13.98□□□□□ -0.17
VCANP13611 CRABP2-204ENST00000621784 1033 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
VCANP13611 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC13.98□□□□□ -0.17
VCANP13611 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VCANP13611 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
VCANP13611 HTR3E-206ENST00000440596 1449 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
VCANP13611 LINC01922-202ENST00000567168 1704 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
VCANP13611 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC13.98□□□□□ -0.17
VCANP13611 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VCANP13611 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
VCANP13611 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms