Protein–RNA interactions for Protein: Q9BYV6

TRIM55, Tripartite motif-containing protein 55, humanhuman

Predictions only

Length 548 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55Q9BYV6 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
TRIM55Q9BYV6 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
TRIM55Q9BYV6 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 CARS-214ENST00000529772 2637 ntTSL 2 BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 POC5-202ENST00000428202 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 ACTR2-202ENST00000377982 2685 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 RTL5-202ENST00000609883 4105 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 AL355102.3-201ENST00000554299 1678 ntBASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 MIR1202-201ENST00000408529 83 ntBASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 AC114812.1-204ENST00000449669 728 ntBASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 AP001258.2-201ENST00000529891 490 ntBASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 AC124312.2-201ENST00000546615 427 ntTSL 3 BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 REV3L-207ENST00000435970 10943 ntTSL 2 BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 PEG10-205ENST00000612748 2585 ntAPPRIS P5 TSL 5 BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 TMEM100-201ENST00000424486 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 AP1B1-202ENST00000357586 4176 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 AHCYP2-201ENST00000430630 1300 ntBASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 DISC1-206ENST00000366637 6848 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC14.34□□□□□ -0.11
TRIM55Q9BYV6 AC144450.1-201ENST00000366424 1641 ntTSL 2 BASIC14.33□□□□□ -0.11
TRIM55Q9BYV6 SUSD6-201ENST00000342745 5388 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
TRIM55Q9BYV6 DYNC1I1-202ENST00000359388 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.11
TRIM55Q9BYV6 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
TRIM55Q9BYV6 SPOUT1-201ENST00000361256 4286 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
TRIM55Q9BYV6 RGS3-205ENST00000374134 2862 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
TRIM55Q9BYV6 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC14.33□□□□□ -0.11
TRIM55Q9BYV6 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 PLOD2-202ENST00000360060 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 YY1AP1-208ENST00000361831 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 PLA2G4B-201ENST00000452633 2985 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 AMT-221ENST00000538581 2038 ntTSL 2 BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 RNU1-114P-201ENST00000365297 166 ntBASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 EIF3FP3-201ENST00000434851 1086 ntBASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 AC005695.3-201ENST00000614522 232 ntBASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 MEGF11-201ENST00000288745 5707 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 NCS1-201ENST00000372398 4991 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM55Q9BYV6 COG6-202ENST00000416691 5257 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms