Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 PRAM1-201ENST00000423345 2667 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 TPO-202ENST00000345913 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 USO1-201ENST00000264904 4135 ntTSL 2 BASIC14.93□□□□□ -0.02
LIG3P49916 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC14.93□□□□□ -0.02
LIG3P49916 MKL1-211ENST00000618196 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 AHI1-201ENST00000265602 4335 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC14.93□□□□□ -0.02
LIG3P49916 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC14.93□□□□□ -0.02
LIG3P49916 NME1-209ENST00000511355 1645 ntTSL 5 BASIC14.93□□□□□ -0.02
LIG3P49916 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
LIG3P49916 AC125807.2-201ENST00000513358 3514 ntBASIC14.93□□□□□ -0.02
LIG3P49916 C1orf167-202ENST00000433342 4545 ntAPPRIS P5 TSL 5 BASIC14.93□□□□□ -0.02
LIG3P49916 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC14.93□□□□□ -0.02
LIG3P49916 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
LIG3P49916 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC14.93□□□□□ -0.02
LIG3P49916 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC14.93□□□□□ -0.02
LIG3P49916 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC14.93□□□□□ -0.02
LIG3P49916 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
LIG3P49916 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC14.93□□□□□ -0.02
LIG3P49916 TLE1P1-201ENST00000422965 589 ntBASIC14.93□□□□□ -0.02
LIG3P49916 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC14.93□□□□□ -0.02
LIG3P49916 AL591846.1-201ENST00000451736 433 ntBASIC14.93□□□□□ -0.02
LIG3P49916 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
LIG3P49916 AGER-214ENST00000538695 487 ntTSL 2 BASIC14.93□□□□□ -0.02
LIG3P49916 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC14.93□□□□□ -0.02
LIG3P49916 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC14.93□□□□□ -0.02
LIG3P49916 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC14.93□□□□□ -0.02
LIG3P49916 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC14.93□□□□□ -0.02
LIG3P49916 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
LIG3P49916 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC14.93□□□□□ -0.02
LIG3P49916 PRKN-211ENST00000615065 261 ntTSL 5 BASIC14.93□□□□□ -0.02
LIG3P49916 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC14.93□□□□□ -0.02
LIG3P49916 AP001002.3-201ENST00000623482 206 ntBASIC14.93□□□□□ -0.02
LIG3P49916 ABBA01031663.1-201ENST00000635630 790 ntBASIC14.93□□□□□ -0.02
LIG3P49916 AC002472.3-201ENST00000640124 621 ntBASIC14.93□□□□□ -0.02
LIG3P49916 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC14.93□□□□□ -0.02
LIG3P49916 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 AGPAT3-202ENST00000327505 3589 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 AGPAT3-204ENST00000398061 3595 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC14.93□□□□□ -0.02
LIG3P49916 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 NCS1-201ENST00000372398 4991 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC14.93□□□□□ -0.02
LIG3P49916 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
LIG3P49916 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LIG3P49916 PPP2R1B-204ENST00000426998 1888 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
LIG3P49916 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIG3P49916 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIG3P49916 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC14.92□□□□□ -0.02
LIG3P49916 CACNA1G-203ENST00000358244 7030 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIG3P49916 Z97192.2-201ENST00000393264 2379 ntTSL 2 BASIC14.92□□□□□ -0.02
LIG3P49916 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LIG3P49916 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC14.92□□□□□ -0.02
LIG3P49916 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC14.92□□□□□ -0.02
LIG3P49916 MCRIP1-212ENST00000576730 2979 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
LIG3P49916 MYO1G-201ENST00000258787 3267 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIG3P49916 DCAF12L1-201ENST00000371126 3382 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIG3P49916 ZMYM3-207ENST00000373998 6067 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LIG3P49916 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LIG3P49916 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIG3P49916 NFKB1-202ENST00000394820 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIG3P49916 ARAF-201ENST00000290277 2504 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIG3P49916 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIG3P49916 ZFYVE27-201ENST00000337540 2927 ntTSL 2 BASIC14.92□□□□□ -0.02
LIG3P49916 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC14.92□□□□□ -0.02
LIG3P49916 VHL-201ENST00000256474 3737 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIG3P49916 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
LIG3P49916 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LIG3P49916 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC14.92□□□□□ -0.02
LIG3P49916 CDC23-208ENST00000505120 455 ntTSL 3 BASIC14.92□□□□□ -0.02
LIG3P49916 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LIG3P49916 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC14.92□□□□□ -0.02
LIG3P49916 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC14.92□□□□□ -0.02
LIG3P49916 MIR4525-201ENST00000580000 75 ntBASIC14.92□□□□□ -0.02
LIG3P49916 AC104982.3-201ENST00000581995 514 ntBASIC14.92□□□□□ -0.02
LIG3P49916 AL096828.3-201ENST00000615354 462 ntBASIC14.92□□□□□ -0.02
LIG3P49916 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIG3P49916 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LIG3P49916 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
LIG3P49916 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIG3P49916 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC14.92□□□□□ -0.02
LIG3P49916 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms