Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 MTHFD2P7-201ENST00000483867 983 ntBASIC13.96□□□□□ -0.17
COL6A3P12111 AC104117.1-201ENST00000517817 900 ntBASIC13.96□□□□□ -0.17
COL6A3P12111 ZNF7-209ENST00000529819 513 ntTSL 4 BASIC13.96□□□□□ -0.17
COL6A3P12111 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A3P12111 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
COL6A3P12111 AC012617.1-204ENST00000586340 2305 ntBASIC13.96□□□□□ -0.18
COL6A3P12111 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC13.96□□□□□ -0.18
COL6A3P12111 TMPRSS13-201ENST00000430170 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
COL6A3P12111 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC13.96□□□□□ -0.18
COL6A3P12111 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.18
COL6A3P12111 BX640514.1-201ENST00000583223 1918 ntBASIC13.96□□□□□ -0.18
COL6A3P12111 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
COL6A3P12111 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC13.96□□□□□ -0.18
COL6A3P12111 AC245297.1-201ENST00000313342 933 ntBASIC13.95□□□□□ -0.18
COL6A3P12111 OR2T33-201ENST00000318021 1066 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
COL6A3P12111 C1QTNF9B-201ENST00000382137 1212 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A3P12111 DAPK1-IT1-201ENST00000431813 702 ntTSL 3 BASIC13.95□□□□□ -0.18
COL6A3P12111 AC034229.1-201ENST00000506299 943 ntTSL 2 BASIC13.95□□□□□ -0.18
COL6A3P12111 SLC10A7-208ENST00000511374 869 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A3P12111 RBP5-202ENST00000542370 564 ntTSL 2 BASIC13.95□□□□□ -0.18
COL6A3P12111 DPPA5P4-201ENST00000559021 365 ntBASIC13.95□□□□□ -0.18
COL6A3P12111 AC011444.2-201ENST00000587759 567 ntTSL 4 BASIC13.95□□□□□ -0.18
COL6A3P12111 AP005264.6-201ENST00000592801 414 ntTSL 2 BASIC13.95□□□□□ -0.18
COL6A3P12111 RER1-203ENST00000378513 3000 ntTSL 3 BASIC13.95□□□□□ -0.18
COL6A3P12111 ZNF384-204ENST00000396801 3008 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
COL6A3P12111 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
COL6A3P12111 AC006486.2-201ENST00000624246 2199 ntBASIC13.95□□□□□ -0.18
COL6A3P12111 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC13.95□□□□□ -0.18
COL6A3P12111 POTEC-201ENST00000358970 1629 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A3P12111 CLEC10A-202ENST00000416562 1646 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
COL6A3P12111 GGPS1-203ENST00000391855 1407 ntTSL 2 BASIC13.95□□□□□ -0.18
COL6A3P12111 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC13.95□□□□□ -0.18
COL6A3P12111 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC13.95□□□□□ -0.18
COL6A3P12111 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A3P12111 PIGB-202ENST00000539642 1668 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
COL6A3P12111 CCDC148-203ENST00000409889 1160 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A3P12111 AGAP13P-201ENST00000417888 363 ntBASIC13.95□□□□□ -0.18
COL6A3P12111 GINS4-203ENST00000518671 1158 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.18
COL6A3P12111 AP005264.6-203ENST00000586882 1050 ntTSL 5 BASIC13.95□□□□□ -0.18
COL6A3P12111 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A3P12111 AC245140.2-201ENST00000624054 1939 ntBASIC13.95□□□□□ -0.18
COL6A3P12111 MYB-242ENST00000618728 3545 ntTSL 5 BASIC13.95□□□□□ -0.18
COL6A3P12111 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
COL6A3P12111 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A3P12111 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC13.95□□□□□ -0.18
COL6A3P12111 AC007622.2-202ENST00000546714 1680 ntTSL 2 BASIC13.95□□□□□ -0.18
COL6A3P12111 OXNAD1-206ENST00000605932 1681 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A3P12111 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A3P12111 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A3P12111 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A3P12111 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC13.95□□□□□ -0.18
COL6A3P12111 AC006022.1-201ENST00000425261 388 ntBASIC13.95□□□□□ -0.18
COL6A3P12111 ALG1L10P-201ENST00000437882 424 ntBASIC13.95□□□□□ -0.18
COL6A3P12111 TGFA-206ENST00000445399 812 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A3P12111 PHBP8-201ENST00000493810 725 ntBASIC13.95□□□□□ -0.18
COL6A3P12111 AC116049.1-201ENST00000505282 385 ntBASIC13.95□□□□□ -0.18
COL6A3P12111 BCRP5-201ENST00000514371 253 ntBASIC13.95□□□□□ -0.18
COL6A3P12111 SSPN-207ENST00000540266 587 ntTSL 4 BASIC13.95□□□□□ -0.18
COL6A3P12111 RPSAP67-201ENST00000584105 862 ntBASIC13.95□□□□□ -0.18
COL6A3P12111 MYO5BP1-201ENST00000610994 1239 ntBASIC13.95□□□□□ -0.18
COL6A3P12111 AC009542.2-204ENST00000636543 433 ntTSL 3 BASIC13.95□□□□□ -0.18
COL6A3P12111 TNNT3-216ENST00000641119 941 ntAPPRIS ALT2 BASIC13.95□□□□□ -0.18
COL6A3P12111 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A3P12111 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A3P12111 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A3P12111 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A3P12111 BPIFB1-201ENST00000253354 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A3P12111 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
COL6A3P12111 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC13.94□□□□□ -0.18
COL6A3P12111 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC13.94□□□□□ -0.18
COL6A3P12111 ZNF33A-205ENST00000469037 1530 ntTSL 5 BASIC13.94□□□□□ -0.18
COL6A3P12111 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A3P12111 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A3P12111 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A3P12111 M1AP-201ENST00000290536 2543 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A3P12111 IQCF6-201ENST00000398780 446 ntAPPRIS P1 TSL 3 BASIC13.94□□□□□ -0.18
COL6A3P12111 AC007312.1-201ENST00000427493 258 ntBASIC13.94□□□□□ -0.18
COL6A3P12111 AP001476.2-201ENST00000435738 355 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A3P12111 AC022150.2-201ENST00000596451 644 ntTSL 3 BASIC13.94□□□□□ -0.18
COL6A3P12111 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC13.94□□□□□ -0.18
COL6A3P12111 CABYR-203ENST00000399496 1414 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A3P12111 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A3P12111 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A3P12111 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A3P12111 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC13.94□□□□□ -0.18
COL6A3P12111 BHMT2-201ENST00000255192 2050 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A3P12111 ZNF343-202ENST00000358413 771 ntTSL 5 BASIC13.94□□□□□ -0.18
COL6A3P12111 SNORA80B-201ENST00000383906 136 ntBASIC13.94□□□□□ -0.18
COL6A3P12111 PYY3-201ENST00000419078 213 ntBASIC13.94□□□□□ -0.18
COL6A3P12111 AC087752.3-201ENST00000523905 709 ntTSL 2 BASIC13.94□□□□□ -0.18
COL6A3P12111 ATP2A2-211ENST00000552636 529 ntTSL 4 BASIC13.94□□□□□ -0.18
COL6A3P12111 AC008738.4-201ENST00000590492 700 ntTSL 3 BASIC13.94□□□□□ -0.18
COL6A3P12111 GMFG-206ENST00000597595 758 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A3P12111 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC13.94□□□□□ -0.18
COL6A3P12111 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC13.94□□□□□ -0.18
COL6A3P12111 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A3P12111 AC011239.2-201ENST00000624820 1489 ntBASIC13.94□□□□□ -0.18
COL6A3P12111 MBOAT4-201ENST00000320542 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A3P12111 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A3P12111 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms